Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g00673 ATGGAGCAAGGAGGTGGAGAAGGAGGTGACATGAACAAACTACCTCATGATTCGAGTATGAAGGAGATGCAACAAGGGGATGCACAGCCTCAGGTTCAGGCCCCTCAACAACCCCAAAAGTGTCCTCGATGCGACTCTCTCAACACCAAATTTTGCTATTACAACAACTATAGCTTGTCACAGCCTCGTTACTTTTGCAAAACATGCAGGAGGTACTGGACTCAAGGTGGAACCTTAAGGAACGTTCCCGTCGGTGGTGGTTGTCGCAAGGGGAAGCGCGCCAAGAGTTCTAATCCGTCATCGTCGGAGAATTCCTCTTCTCGGTCGCTGCCGCAACAACAACAATCGCAAGACGTGGTGGTTCATACCCAACCACCACCTTTAACAACGGTGGTGAGGGCTAAAGACCCTTCTTCGGTTCTGGCTTCACCTTTCTACCAAAGTGGTGGGTACTTGTCTTCTCTGGCTGCTATGCATTCGCTCAATCCATCATCACATCCTTTTGATCAGTCTCTGAACAGTGACGCCTTGCGTTCTTCCAATTTGGGCCTTCTATCTGGTTTCAATGTTCAGCGGCCGACTGGATCGATTGGGACAATTCGTCCGCCGCAATTGTATCAAATGGGCAGTGGTCAGAGGGAGGTGGCGTCTCTCTATGATCAAGGTTTGGTTAATCCATCCTCCAGCATGGCTAATACCAATACCAATAGCAGTGGCGTTTCTCACCATGATTGGTCTCAGAGCTTCATCAGTAATAATACTAATGCCAGCAACAGAGCCTCTGATGCCTCTTTGTGGAGCACCATCAGTACCACTATTGGTGGTAACTCCGAGAGGACTGGTGCTGGTACTGTTTCTGGGTCGTCTTTGGTCCAAAATCAATGGCCTGATATTCCAGGGTATGGCCCTCCACCGTGA 918 0.4956 MEQGGGEGGDMNKLPHDSSMKEMQQGDAQPQVQAPQQPQKCPRCDSLNTKFCYYNNYSLSQPRYFCKTCRRYWTQGGTLRNVPVGGGCRKGKRAKSSNPSSSENSSSRSLPQQQQSQDVVVHTQPPPLTTVVRAKDPSSVLASPFYQSGGYLSSLAAMHSLNPSSHPFDQSLNSDALRSSNLGLLSGFNVQRPTGSIGTIRPPQLYQMGSGQREVASLYDQGLVNPSSSMANTNTNSSGVSHHDWSQSFISNNTNASNRASDASLWSTISTTIGGNSERTGAGTVSGSSLVQNQWPDIPGYGPPP 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g00673 305 MobiDBLite consensus disorder prediction 83 120 - -
Vimu2g00673 305 MobiDBLite consensus disorder prediction 274 295 - -
Vimu2g00673 305 MobiDBLite consensus disorder prediction 18 40 - -
Vimu2g00673 305 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 27 241 IPR045174 GO:0003700|GO:0006355
Vimu2g00673 305 MobiDBLite consensus disorder prediction 274 305 - -
Vimu2g00673 305 ProSiteProfiles Zinc finger Dof-type profile. 39 93 IPR003851 GO:0003677|GO:0006355
Vimu2g00673 305 ProSitePatterns Zinc finger Dof-type signature. 41 77 IPR003851 GO:0003677|GO:0006355
Vimu2g00673 305 MobiDBLite consensus disorder prediction 94 120 - -
Vimu2g00673 305 MobiDBLite consensus disorder prediction 1 40 - -
Vimu2g00673 305 Pfam Dof domain, zinc finger 37 93 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g00673 Vimu-Chr2 4021112 4022029 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g00673 12 97 C2C2-Dof Transcription Factor Family AT5G60200 65.116 1.27e-35 127
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Vimu2g00673 zf-Dof 9.9e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g00673 - - gmx:100817065 458.759
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu2g00673 2 4021112 4022029 Vimu2g00673 2 4021112 4022029 ECH
Vimu11g03617 11 58030223 58030699 Vimu2g00673 2 4021112 4022029 PCT