Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g00625 ATGGGGTTGAGTTCTAAGCAGGTTTCTAATAGAGGGCTTGATTGGGACCAGACTTTGTTGCAGGCTCAAAACTTGGAGCTCCCAAAGCCTACTCCTATGAGGAAACAACAGCAACAGACTCAGCCATCAGAGCCTTTGAAGTGTCCAAGATGTGACTCCATTAACACCAAATTCTGTTACTACAACAACTACAACAAGTCTCAACCTCGCCATTTCTGCAGAGCTTGCAAGAGGCACTGGACTAAAGGTGGAACTCTGCGCAACGTTCCTGTTGGCGGTGGTCGAAAGAATAAGCGAGCGAAGAAATCGACCACATCTACAACCACCACCTCAAATGGAAGCATGGATGATGAGTTGAGAACCCGCGTTACAGTTCCTCCTCTTGCAATGGATGATCATAAAACTACACCTTCCTCTCTCTACGAATCTCTGTGCCTGCCACAACAGAATCCGACGAGTACCAAAGTTTCCGAAGGCAAGGACTTTGGTATTGGCAATGGAATCTTTCTGAGTTCAACCGTGCCTTTTCCTCAAAACCAAAGCCTTCTCTTCCCTTTCACAACCTCAAACTCCTTTGACACAAACACGTGTGCAGTATCCAACTCTTTGCAATCCTCCAGTGTGTATAACTACGGTGACGAGTTTAAAATACTGGAGGAGCCAACCGTGAACAGTACAATGGCCTGCACTAGTGGTGGCACCAGGACACAACCATGGGAGATCGCAGCAACAAGTTCTGGTTTGGAAATGTCCAACTATTGGAGTTGGGAGGACATCGATTCCTTGGTCTCAACCGATCCAAATAATCCTTGGGATGATTCCGATATCAAACCCTGA 837 0.4671 MGLSSKQVSNRGLDWDQTLLQAQNLELPKPTPMRKQQQQTQPSEPLKCPRCDSINTKFCYYNNYNKSQPRHFCRACKRHWTKGGTLRNVPVGGGRKNKRAKKSTTSTTTTSNGSMDDELRTRVTVPPLAMDDHKTTPSSLYESLCLPQQNPTSTKVSEGKDFGIGNGIFLSSTVPFPQNQSLLFPFTTSNSFDTNTCAVSNSLQSSSVYNYGDEFKILEEPTVNSTMACTSGGTRTQPWEIAATSSGLEMSNYWSWEDIDSLVSTDPNNPWDDSDIKP 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g00625 278 ProSitePatterns Zinc finger Dof-type signature. 48 84 IPR003851 GO:0003677|GO:0006355
Vimu2g00625 278 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 34 195 IPR045174 GO:0003700|GO:0006355
Vimu2g00625 278 ProSiteProfiles Zinc finger Dof-type profile. 46 100 IPR003851 GO:0003677|GO:0006355
Vimu2g00625 278 Pfam Dof domain, zinc finger 45 99 IPR003851 GO:0003677|GO:0006355
Vimu2g00625 278 MobiDBLite consensus disorder prediction 84 116 - -
Vimu2g00625 278 MobiDBLite consensus disorder prediction 26 47 - -
Vimu2g00625 278 MobiDBLite consensus disorder prediction 26 46 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g00625 Vimu-Chr2 3687094 3687930 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g00625 35 124 C2C2-Dof Transcription Factor Family AT1G51700 55.446 7.24e-30 109
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Vimu2g00625 zf-Dof 9.9e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g00625 - - vra:106774613 540.806
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g03562 11 57283735 57285771 Vimu2g00625 2 3687094 3687930 PCT