Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g03195 ATGGCGGTAGATAATCCTGAGGATGGATTGAAGAAGTTGGAATACTTGTCTCTCGTGTCGAAGGTATGCACCGAGTTGGAGTCCCACACCGGCACCGGCGACAAAGTTCTGGCGGAGTTCATCACTGAGTTGGGTCGGTCATCGGAGAATGTTGAGGAATTTGACGCGAAATTGAAGGAGAATGGTGCGGAAATGCCGGATTACTTTGTCCGAACGCTCCTCACTATTATTCACGCGATTCTCCCTCCCAAGCCGAAGGATTTGAAAAAGGAGAAAGAGACTGTCAACGGCAAGACCAAGTTCAAGGCTCTGGCCATCGCAGACGATAGGGACCGGGCCAAGGAGCTTCGGAATGAGATAGAATCTGAGGCAAGGGAGAAGCAGAGTGAGCAAATTGAGGAAGATGATGGGTACAGAGACAGAGATAGAAGAGATAGGCGCAGAGATAGGTATGATGAAGATGATAGAAGAGATAATCGCAGAAGAGGAAGAGACAGAGATGATGAAGATGATAGAAGGGATTACAGCAGAAGAGGTAGAGATAGAGACGATGAAGATGATAAAAGGGATTACAGCCGAAGAGGAAGAGATAAATATGATAAGGATAGAGATAGAGATGGTGACAGGTATGAGAGGCGCAGGAGAGATGATTATGAAGAGAATGGTCGTGGAAGGGAGAATGGAGATAGAGATGGTAATAAGAAGGGTACACGGCATGTTTCTGGTGAACCTGAATTATATGCCGTTTACAAAGGGAGGGTGTCCAGGGTAATGGAAACTGGGTGCTTTGTCCAGTTAGAAGACATAAGAGGCAAGGAGGGGTTGGTCCATGTGTCACAGATGGCCACTCGGAGGATCACAAATGCCAAAGACGTCATTAAGCGCGACCAGGAGGTTTATGTAAAGGTGATCTCAGTTTCCGGTCAGAAGTTGTCTCTTTCCATGAGGGACGTTGATCAGCACACAGGTAAGGATCTCCTTCCGTTGAAGAAGAGCTCCGAGGACGATGCCTTGAGGATGAATCCGCAGGGTTCAAGGGATGGACCGGTTACCAGGACAGGTCTTTCAGGTATCAGGATTGTAGAAGAGGATGATGTTGGTTCTTCACGGAGACCTCTGAAGAGAATGAGCTCACCGGAGAGATGGGAAGCAAAACAGTTGATTGCTTCAGGTGTGATGAGTGTTTCAGAGTATCCAACTTATGACGATGAGGGAGATGGATTGCTGTACCAAGAGGAAGGAGCTGAGGAGGAGCTTGAGATTGAGTTGAATGAGGATGAACCCGCATTCTTGCAAGGGCAGAGCAGATACTCAATGGATATGTCTCCTGTTAAGATTTTTAAGAATCCTGAAGGTTCTCTGGGTCGAGCTGCTGCACTTCAGTCTGCACTTATAAAGGAGCGTAGGGAAGTGCGAGAACAACAACAACGGACAATGCTTGATTCAATTCCGAAGGATCTCAATCGGCCTTGGGAAGACCCTATGCCAGAGTCAGGTGAAAGGCATCTTGCCCAGGAGCTTAGGGGTGTTGGTTTATCAGCCTATGATATGCCAGAATGGAAGAAGGATGCATATGGGAAAACAATTACCTTTGGGCAAAGGTCGAAGCTTTCTATTCAAGAGCAGAGGCAGAGTTTGCCTATTTACAAGTTAAAAAAAGAATTGATTCAGGCTGTGCATGATAATCAGGTGTTGGTTGTTATTGGAGAAACTGGTTCTGGTAAGACTACTCAGGTCACACAGTATCTTGCCGAAGCAGGTTATACCACAAAAGGAAAAATTGGATGTACTCAACCTCGTAGGGTGGCTGCAATGTCAGTTGCAAAGAGAGTAGCAGAAGAGTTTGGTTGTAGATTGGGAGAAGAAGTTGGTTATGCCATTCGGTTTGAGGATTGCACTGGACCAGATACTGTTATCAAGTACATGACAGATGGTATGCTTCTTAGGGAAATATTGGTCGATGAGAATCTGTCACAGTATTCTGTTATAATGCTTGACGAAGCCCATGAAAGAACTATTCATACTGATGTTCTTTTTGGACTGCTCAAGCAGCTAGTGAAGCGAAGACCCAAATTGCGATTGATTGTCACTTCTGCTACTCTGGACGCCGAGAAATTTTCAGGATATTTCTTTAACTGTAACATCTTTACAATTCCTGGTAGAACTTTTCCTGTAGAGATACTTTATACCAAACAGCCGGAAAGTGATTATTTAGATGCATCTTTAATAACTGTCCTACAGATACACTTGACAGAGCCTGAGGGAGACATTCTTCTCTTTTTGACTGGGCAAGAGGAGATTGATTTTGCTTGCCAATCTCTATACGAGAGAATGAAGGGATTAGGTAAGAATGTTCCAGAGCTGATCATTTTACCGGTTTATAGTGCCCTTCCTAGTGAAATGCAGTCTAGGATATTTGATCCTGCTCCTCCAGGGAAAAGGAAAGTGGTCGTGGCTACTAACATTGCTGAGGCTTCTTTGACTATTGATGGGATATTTTATGTAATTGATCCTGGATTTGCTAAGCAAAATGTTTATAACCCAAAGCAAGGTCTTGATTCTTTGGTAATAACTCCAATTTCACAAGCATCAGCGAAACAAAGAGCTGGACGTGCAGGGCGTACTGGACCTGGGAAGTGTTATCGCCTTTACACTGAGAGTGCATACAGGAATGAGATGTCTCCCACTACAATTCCTGAGATTCAAAGGATAAATCTGGGGATGACTACACTTAATATGAAAGCAATGGGGATAAATGATCTACTGTCCTTTGATTTTATGGATCCACCATCACCTCAAGCACTGATTTCTGCCATGGAGCAGCTTTACAGTCTAGGAGCATTGGATGAAGAGGGCCTTCTGACCAAATTGGGGAGGAAAATGGCAGAATTTCCTTTGGATCCACCTTTGTCCAAGATGTTGCTTGCCAGCGTCGACCTTGGATGCAGTGATGAGATTTTAACCATAATTGCCATGATCCAGACTGGTAATATTTTTTACAGGCCAAGGGAAAAGCAAGCCCAAGCAGATCAGAAGAGGGCAAAGTTTTTCCAGCCAGAGGGTGATCATCTGACACTACTTGCTGTTTATGAGGCTTGGAAAGCCAAGAATTTTTCTGGGCCCTGGTGTTTTGAGAATTTTGTGCAATCTAGATCGTTGAGAAGAGCACAGGATGTCAGGAAACAACTTCTCACCATTATGGATAAGTACAAATTGGACGTTGTAAGTGCTGGAAAAAACTTCACCAAAGTAAGGAAGGCTATCACTGCTGGATTCTTTTTTCACGCTGCCAGAAAGGATCCCCAGGAAGGATACAGAACTCTAGTTGAGAACCAACCTGTGTATATCCATCCAAGTTCTGCTTTGTTCCAGAGGCAGCCAGACTGGGTCATATACCATGAGCTTGTGATGACAACTAAGGAGTATATGCGTGAGGTGACTGTCATAGACCCCAAATGGCTTGTTGAACTGGCTCCAAGATTTTTCAAAGTAGCAGATCCTACAAAGATGAGCAAGCGGAAGCGTCAAGAGCGAATTGAGCCACTTTATGATAGATACCACGAGCCAAATTCATGGCGTTTGAGTAAACGTCGTGCATGA 3600 0.4458 MAVDNPEDGLKKLEYLSLVSKVCTELESHTGTGDKVLAEFITELGRSSENVEEFDAKLKENGAEMPDYFVRTLLTIIHAILPPKPKDLKKEKETVNGKTKFKALAIADDRDRAKELRNEIESEAREKQSEQIEEDDGYRDRDRRDRRRDRYDEDDRRDNRRRGRDRDDEDDRRDYSRRGRDRDDEDDKRDYSRRGRDKYDKDRDRDGDRYERRRRDDYEENGRGRENGDRDGNKKGTRHVSGEPELYAVYKGRVSRVMETGCFVQLEDIRGKEGLVHVSQMATRRITNAKDVIKRDQEVYVKVISVSGQKLSLSMRDVDQHTGKDLLPLKKSSEDDALRMNPQGSRDGPVTRTGLSGIRIVEEDDVGSSRRPLKRMSSPERWEAKQLIASGVMSVSEYPTYDDEGDGLLYQEEGAEEELEIELNEDEPAFLQGQSRYSMDMSPVKIFKNPEGSLGRAAALQSALIKERREVREQQQRTMLDSIPKDLNRPWEDPMPESGERHLAQELRGVGLSAYDMPEWKKDAYGKTITFGQRSKLSIQEQRQSLPIYKLKKELIQAVHDNQVLVVIGETGSGKTTQVTQYLAEAGYTTKGKIGCTQPRRVAAMSVAKRVAEEFGCRLGEEVGYAIRFEDCTGPDTVIKYMTDGMLLREILVDENLSQYSVIMLDEAHERTIHTDVLFGLLKQLVKRRPKLRLIVTSATLDAEKFSGYFFNCNIFTIPGRTFPVEILYTKQPESDYLDASLITVLQIHLTEPEGDILLFLTGQEEIDFACQSLYERMKGLGKNVPELIILPVYSALPSEMQSRIFDPAPPGKRKVVVATNIAEASLTIDGIFYVIDPGFAKQNVYNPKQGLDSLVITPISQASAKQRAGRAGRTGPGKCYRLYTESAYRNEMSPTTIPEIQRINLGMTTLNMKAMGINDLLSFDFMDPPSPQALISAMEQLYSLGALDEEGLLTKLGRKMAEFPLDPPLSKMLLASVDLGCSDEILTIIAMIQTGNIFYRPREKQAQADQKRAKFFQPEGDHLTLLAVYEAWKAKNFSGPWCFENFVQSRSLRRAQDVRKQLLTIMDKYKLDVVSAGKNFTKVRKAITAGFFFHAARKDPQEGYRTLVENQPVYIHPSSALFQRQPDWVIYHELVMTTKEYMREVTVIDPKWLVELAPRFFKVADPTKMSKRKRQERIEPLYDRYHEPNSWRLSKRRA 1199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g03195 1199 Gene3D - 518 721 IPR027417 -
Vimu1g03195 1199 Gene3D - 921 1020 - -
Vimu1g03195 1199 ProSitePatterns DEAH-box subfamily ATP-dependent helicases signature. 661 670 IPR002464 -
Vimu1g03195 1199 PANTHER ATP-DEPENDENT RNA HELICASE 478 1161 - -
Vimu1g03195 1199 CDD DEXHc_DHX8 541 719 IPR044762 GO:0000398|GO:0003724|GO:0005524
Vimu1g03195 1199 Gene3D - 722 896 IPR027417 -
Vimu1g03195 1199 Pfam Oligonucleotide/oligosaccharide-binding (OB)-fold 1084 1159 IPR011709 -
Vimu1g03195 1199 SUPERFAMILY Nucleic acid-binding proteins 247 323 IPR012340 -
Vimu1g03195 1199 FunFam Pre-mRNA-splicing factor ATP-dependent RNA helicase 921 1020 - -
Vimu1g03195 1199 Pfam Helicase associated domain (HA2) 938 1026 IPR007502 GO:0004386
Vimu1g03195 1199 CDD S1_DHX8_helicase 247 323 - -
Vimu1g03195 1199 Pfam DEAD/DEAH box helicase 552 702 IPR011545 GO:0003676|GO:0005524
Vimu1g03195 1199 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 556 719 IPR014001 -
Vimu1g03195 1199 FunFam Pre-mRNA-splicing factor ATP-dependent RNA helicase 722 896 - -
Vimu1g03195 1199 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 744 917 IPR001650 -
Vimu1g03195 1199 Pfam S1 RNA binding domain 247 314 IPR003029 GO:0003676
Vimu1g03195 1199 Pfam Helicase conserved C-terminal domain 746 876 IPR001650 -
Vimu1g03195 1199 Gene3D - 242 327 IPR012340 -
Vimu1g03195 1199 SMART S1_6 245 316 IPR022967 -
Vimu1g03195 1199 SMART helicmild6 772 876 IPR001650 -
Vimu1g03195 1199 MobiDBLite consensus disorder prediction 121 240 - -
Vimu1g03195 1199 CDD GH2-like_DHX8 13 80 - -
Vimu1g03195 1199 FunFam ATP-dependent RNA helicase DHX8 242 327 - -
Vimu1g03195 1199 SMART ha2_5 937 1027 IPR007502 GO:0004386
Vimu1g03195 1199 Coils Coil 457 477 - -
Vimu1g03195 1199 SMART ultradead3 544 728 IPR014001 -
Vimu1g03195 1199 Coils Coil 106 133 - -
Vimu1g03195 1199 MobiDBLite consensus disorder prediction 331 353 - -
Vimu1g03195 1199 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 536 1069 IPR027417 -
Vimu1g03195 1199 FunFam Pre-mRNA-splicing factor ATP-dependent RNA helicase 512 721 - -
Vimu1g03195 1199 ProSiteProfiles S1 domain profile. 247 316 IPR003029 GO:0003676
Vimu1g03195 1199 CDD SF2_C_RHA 723 884 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g03195 Vimu-Chr1 44101755 44105665 Dispersed/Transposed