Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g03183 ATGGAGGGAGAGGATATTAGGTCTGGGACCAGGAAGAAGCGATCCAAGAAGGAAATTGGTTTTGACTCTGACGACGACGAGCCCATTGGCTCAATCTTTAAGCTGAAGAGGTCCAAGAGGAAAGGTAGTGGTGGTGGTGAGGCTGTTAGGGAGAAGGAGGATTTGGGGGGTATGGATGATAATGATACCTTGGCTAGCTTTAGGAAGAGATTGAAGGGTCCTAAAAGAGATCAGGGATCTGGGTTTGGAAGAGGAGCAAGTCCTGCTTTGCATGTGTCTGATGAAGAATTGGTTGGATTGGGAGCTAAGGATAAGGATGAGAAAGGGGTCGCCTTGGTGCCTGCTGGTGAGGACATGCAGATGGAGGATTCTTCTGATCAACACATGGAGGATTCGTTGTCTGCGATTTTTCAGAAGGCGCAGTCTAGTTCTGCTAGGAAATCTCGTGGGATTTCGAGACAGAAAAGGGGGATTCAGAAGGTGGATAGTGGGTTGTGCCCTGGAGGTTTTGTGGAAACTGTGGATTCTGGGGTTGAAAGTAGATCCGGATCTGCTTCTGGCTCGAAATTGGTTGGGGTGAATGCCATTTCTGATGATGCTTTGCCTCAAGCGTCTGAACCGGTTGTCACATCCGTGGTGGAGGATCAGAAGTGTGTTAATGACTGTTTTCAAGAGGGAACTGTTAAGGGTGAATGTGATTTGGACATTCCAGGTGGACGGAATCAGTCAAATGATGTCTACCGTGAAGATGGGAAGCAGTTTTCTTGTGTTGTACAAGCTGAAGATATTTCTTGTGATTCTGACAAGAAGGTTGCACTGCAGGAAAGTGGTGTTATCAGTGGTGATTTACATAAGTTATCTTCTATGTTAAACGATGAAATAGTTGATACCGCCTCTCTCTCAAAACTGGGGGAAGCGGAAAGACAATTTACTGAGGTCTGGGAGCTTGAGAATAGATTGACCGATGACCTAGTACAAGCATGCAACAGTGCTCCAGAACATGATATTTCTACTTCTTCAGGGGAAAAAAATGTCTTGAAATCTTCGCACATTGAACCCTTGATTAAATCAACTGAAAATGCATTGAATGAGAATAATGATATGGTTTCTGGAAAAGATTGTCAGGAATCCGCGAGTAATGGAGCTAAGTTATTTGGATGCCATATGGAAGCAGATGGAGCTGGAAAATCAGAAATTGAGTTTGTTTCTGATAGAAATTTCTGTGATTATAGTAACTTAGATACAAAGGCTGAAGTGCATGATTTTGTTCTAGGTTTTTCACCTAAAAGAAATGATGTAACTGTCAGTGGTTCTTCTATGGTGTCTAATGAAGCTGATTTGGCCGCCCACTCAAATCATCCAGAGAAACCTGTAGAAGCTCGCAATATTCCAAAAGACCCCACTGCTTCTATTATGAAATGTAGCTCGGTTTTAGATCCAAATCAATCGGATGGATCCTCTCTTCAATCTTCAATTCCAGATGAAAATGGGAACTCTGTGGAATACCATGCCTCTGTGACTGATTTTGTCGATAATGATGGTAAAATATCAAGCATTCCAAGGTTGGTGCGTAAGACCAAAATGCGCAAGCATGGAGACATGACATATGAGGGGGATGCTGACTGGGAGGTTTTAATTAATGATCAAGCTCTAAATGAAAGTCAAGTTATGACAGATGTTGAACGCACTCTTAGAACAAGAATGAAGCATGATTCCTCTTTGAATACTGGTGAAGACTCTGAAAATGTTGCAGTAGTGGCAGTATCAGCTGGGCTGAAAGCCCGTAAAGCTGGTCCAATCGAGAAAATAAAGTTTAAAGAGATCTTGAAACGAAAAGGTGGTCTCAAGGAATACTTGGATTGCAGAAATCAGATTTTAAGTCTTTGGAGCCGAGATGTCACACGTATTTTGCCTCTTGCTGAATGTGGAGTTGATACTGATTCTGAGGATGGAAGTCCTCGTTCTTCTCTTATTAGGGAGGTCTATGCATTTCTTGATCAATATGGTTATATAAATGTTGGAATTGCCTCCCAGAAGGAGAATGTTGGAAGTAGTGCAAGGCACTGTTATAAACTGGTAAAAGAAAAAGGTTTTGAGGAAAGTCTCGCAGCTTCAATGGTCGACTCTGAAGATGAAGTTTCCTTTCTTGTTGGTCAGACTAAAATGTCAGATGCTTCCAATGAGGTTAACAATGGTCTAAGAAAGGATTGCAATGACCTGACAATTGAAGCTACAGAAGGTATGGGCCACAGTAATGAAGTGAAGGTGGATTTATCAAACATATCACAACAGGCAGAAGGAAAAATTTTTGATTACCAGGAAAATGATGGATTTCAGGATGGAACTATTGTCAGTTCCGTTCCTTCTTCCAACTTTGCTGATTGCAAATTAACTTCTCTGATAGCTAAAGAGAAAAGCAATGATTCTACCTGCATTAAATCTGTCTGGGATGGTCAGGTAGGTGACAATCTGCAGCCTGATTTAGATCCTAGAAAGAGAGTAATTGTGATTGGAGCTGGGCCTGCTGGGTTAACTGCTGCTCGCCACTTGCAACGTCAAGGATTTCCTGTTACTGTGCTTGAGGCTAGGAGTAGGATAGGAGGTCGTGTGTTTACTGATCACTCTTCACTTTCTGTCCCTGTCGATCTTGGAGCTAGCATTATAACTGGTGTTGAGGCTGATGTGGCCACTGAGCGAAGACCAGATCCTTCCTCGTTGATTTGTGCTCAGTTGGGCCTTGAGTTGACAGTGTTGAATAGTGACTGCCCTCTTTATGACATAGTGACAGAACAAAAAGTTCCTGCAGATATGGATGAAGCACTTGAAGCTGAATATAATACCCTTATAGATGACATGGTATTGGTTGTTGCTCAGAAAGGTGAACAAGCAATGAAAATGTCTCTTGAAGATGGTTTAGAATATGCCCTCAAGATTCGGCGTACTGCACGCACCGAAAGTAGTGAAGAAATTGAACAAAACAATTCTGTTGATAGACCATTTGATTCCAAAAGGGACAGTTCTGTGGAAAAAAAGCTTGATGAGGAGATTTTGAGCCCTCAGGAGAGGAGGGTTATGGATTGGCACTTTGCTCATTTGGAGTATGGTTGTGCTGCTTCACTTAATGATGTTTCTCTTCCCTACTGGAATCAAGATGATGTGTATGGAGGTTTTGGGGGAGCTCATTGTATGATTAAAGGGGGTTACAGTTCCGTTGTTGAGTCTCTGGGAGAAGGAATTACAATTCACTTGAACCATGTTGTAACAAATGTGTCATATGGTATCAAGGAACCTGATCAAAGTTATAAAGTCAAAGTTTCTACAGCAAATGGCAATGAGTTCTTTGGTGATGCTGTTCTTGTTACTGTTCCACTTGGCTGTTTGAAGGCTGAAACTATACAATTCTCCCCACCTTTGCCACAGTGGAAATGTTCTTCTGTTCAGCGTCTTGGTTATGGAGTTCTAAATAAAGTGGCTTTGGAATTTCCTAGTGTATTTTGGGATGACGCTGTGGACTACTTTGGAGCAACAGCTGAGGAGAGAAGCAGTAGAGGTCACTGCTTTATGTTCTGGAATGTCAGGAAAACAGTTGGGGCTCCTGTCCTTATTGCATTAGTGGTTGGTAAGGCAGCCATAGATGGTCAAAGCTTGAGCTCTGCTGATCATGTTAAACATGCATTGAAGGTTCTCCGAAAACTTTTTGGGCAGGATTCGGTTCCAGATCCTGTTGCCTATGTTGTGACTGATTGGGGTAGGGATCCTTTTAGCTATGGTGCTTATTCTTATGTTGCGGTTGGAGCCTCAGGAGAAGACTATGATATATTAGGGAGACCAGTTGATAACTGCTTGTTTTTTGCTGGTGAAGCAACCTGCAAAGAGCACCCAGATACTGTTGGTGGTGCAATGATGAGTGGACTACGAGAATCTGTTCGCATAATTGACATATTGAGCACTGGAAATGATTATATTGCTGAGGTGGAGGCATTGGAAGCTGCACGGGGACAATTAGACACTGAAAGGGATGAAGTGAGGGATATAATAAAGAGACTTGATGCAGTAGAACTTTCTAACATAATGTACAAGAACTCTTTAGATGGTGCTCAAATTTTAACCCGGGAAGCTTTGTTAAGGGAAATGTTCTTTAATACGAAAACCACTGCTGGACGCTTGCATGTGGCCAAACAATTGTTAACTCTTCCTGTTGGAAACTTGAAGTCTTTTGCTGGAAGTAAAGAGGGGCTAGCCATTCTCAATTCATGGATACTGGATTCAATGGGAAAGGATGGGACCCAACTCTTGAGGCATTGTTTGCGACTTCTTGTCCGTGTTTCAACTGATCTTCTTGCTGTACGATTGTCAGGAATGGGGAAAACAGTGAAGGAAAAAGTTTGTGTACATACCAGCCGTGATATTCGTGCTATAGCAAGCCAGTTGGTCAATGTATGGCTTGAAGTTTTTCGCAAGGAAAAAGCTTCTAATGGTGGATTAAAGTTACCAAGACAAACAACTATAGTAGATTTATCTAAGAGAAAATCTTGCAAAGATTCAGCTTCGGGAAAACCACCTCTGGGCACATATCATGGTACCAGTGAGAATAAAGGAGGCTTGCTGAATCCTACCTCTGCTGGAAGCAATTCACCTTCCCATGCCCATGTGAAGAAATTGCACAGCAAACAAGGAAGACAGCTGCCATCATATGACTCAAGGCATGAATTCAGTTCTTCCAGGTCCAAAGGTTCAATAGACAGAGTGGTTACAGAGAAGGAGGATAACCACTGTGCTATATCTGAAGAAGAACAGGCTGCTATAGCTGCTGCAGAGGCTGCACGTGTTAAAGCTCTTGCTGCTGCTGAGGCATATGCTTCTGCAGAAGCCAGATCCAATTCGCTGTTACAGCTTCCTAAGATACCCTCATTCCATAAATTTGCTAGACGTGAGCAGTCTTCACAAAATGACGAGTGTGATAGTAGAAAAAGATGGTCAGGTGGTGTTTTTGGAAGGCAAGATTGTATTTCAGAGATTGATTCTAGGAATTGCAGGGTTAGGGATTGGTCTGTTGATTTCTCTGCTGCTTGTGTCAATCTTGATAATTCCAGAATGCCAGTTGATAACCTCTCACAGAGGAGTCATTCAAATGAGATTGCCAGCCATTTGAATTTCAGAGAGCACTCAGGAGAAAGTGCTGCTGGGGACAGCAGTATATATACGAAAGCTTGGATTGACACAGCTGGTGGTGTTGCAATTAAAGATCATCATGCCATTGAGAGATGGCAATCTCAAGCAGCTGCAGCAGATTCTTATTTTTCTAACCCCACCATTGATTTGAAGGACGAGGAGGACTCAAATGCCTGTTCAAAGCTACCAATCTGGAAGCGTGATGGTGTTGCTAATGAGAGCTCTATTTCACAGGTTACTGTAAATAAGGAGGCCCTGAAGAGTCATTCCCGAGCAGCAGATCATATTAAACAGGCTGTTGTGGACTATGTTGCATCACTGCTGATGCCCCTTTATAAGGCAAGAAAACTAGACAAGGATGGATACAAGGCTATAATGAAGAAAAGTGCAACAAAGGTCATGGAGCAAGCTACGGACGCAGAAAAAGCCATGACTGTACGTGAGTTTCTAGATTTTAAGCGGAAGAATAAGATTCGCTCCTTTGTGGATATACTGATTGAGAGGCACATGACAATGAAATCAGATGTGAAATCTTAA 5709 0.4251 MEGEDIRSGTRKKRSKKEIGFDSDDDEPIGSIFKLKRSKRKGSGGGEAVREKEDLGGMDDNDTLASFRKRLKGPKRDQGSGFGRGASPALHVSDEELVGLGAKDKDEKGVALVPAGEDMQMEDSSDQHMEDSLSAIFQKAQSSSARKSRGISRQKRGIQKVDSGLCPGGFVETVDSGVESRSGSASGSKLVGVNAISDDALPQASEPVVTSVVEDQKCVNDCFQEGTVKGECDLDIPGGRNQSNDVYREDGKQFSCVVQAEDISCDSDKKVALQESGVISGDLHKLSSMLNDEIVDTASLSKLGEAERQFTEVWELENRLTDDLVQACNSAPEHDISTSSGEKNVLKSSHIEPLIKSTENALNENNDMVSGKDCQESASNGAKLFGCHMEADGAGKSEIEFVSDRNFCDYSNLDTKAEVHDFVLGFSPKRNDVTVSGSSMVSNEADLAAHSNHPEKPVEARNIPKDPTASIMKCSSVLDPNQSDGSSLQSSIPDENGNSVEYHASVTDFVDNDGKISSIPRLVRKTKMRKHGDMTYEGDADWEVLINDQALNESQVMTDVERTLRTRMKHDSSLNTGEDSENVAVVAVSAGLKARKAGPIEKIKFKEILKRKGGLKEYLDCRNQILSLWSRDVTRILPLAECGVDTDSEDGSPRSSLIREVYAFLDQYGYINVGIASQKENVGSSARHCYKLVKEKGFEESLAASMVDSEDEVSFLVGQTKMSDASNEVNNGLRKDCNDLTIEATEGMGHSNEVKVDLSNISQQAEGKIFDYQENDGFQDGTIVSSVPSSNFADCKLTSLIAKEKSNDSTCIKSVWDGQVGDNLQPDLDPRKRVIVIGAGPAGLTAARHLQRQGFPVTVLEARSRIGGRVFTDHSSLSVPVDLGASIITGVEADVATERRPDPSSLICAQLGLELTVLNSDCPLYDIVTEQKVPADMDEALEAEYNTLIDDMVLVVAQKGEQAMKMSLEDGLEYALKIRRTARTESSEEIEQNNSVDRPFDSKRDSSVEKKLDEEILSPQERRVMDWHFAHLEYGCAASLNDVSLPYWNQDDVYGGFGGAHCMIKGGYSSVVESLGEGITIHLNHVVTNVSYGIKEPDQSYKVKVSTANGNEFFGDAVLVTVPLGCLKAETIQFSPPLPQWKCSSVQRLGYGVLNKVALEFPSVFWDDAVDYFGATAEERSSRGHCFMFWNVRKTVGAPVLIALVVGKAAIDGQSLSSADHVKHALKVLRKLFGQDSVPDPVAYVVTDWGRDPFSYGAYSYVAVGASGEDYDILGRPVDNCLFFAGEATCKEHPDTVGGAMMSGLRESVRIIDILSTGNDYIAEVEALEAARGQLDTERDEVRDIIKRLDAVELSNIMYKNSLDGAQILTREALLREMFFNTKTTAGRLHVAKQLLTLPVGNLKSFAGSKEGLAILNSWILDSMGKDGTQLLRHCLRLLVRVSTDLLAVRLSGMGKTVKEKVCVHTSRDIRAIASQLVNVWLEVFRKEKASNGGLKLPRQTTIVDLSKRKSCKDSASGKPPLGTYHGTSENKGGLLNPTSAGSNSPSHAHVKKLHSKQGRQLPSYDSRHEFSSSRSKGSIDRVVTEKEDNHCAISEEEQAAIAAAEAARVKALAAAEAYASAEARSNSLLQLPKIPSFHKFARREQSSQNDECDSRKRWSGGVFGRQDCISEIDSRNCRVRDWSVDFSAACVNLDNSRMPVDNLSQRSHSNEIASHLNFREHSGESAAGDSSIYTKAWIDTAGGVAIKDHHAIERWQSQAAAADSYFSNPTIDLKDEEDSNACSKLPIWKRDGVANESSISQVTVNKEALKSHSRAADHIKQAVVDYVASLLMPLYKARKLDKDGYKAIMKKSATKVMEQATDAEKAMTVREFLDFKRKNKIRSFVDILIERHMTMKSDVKS 1902
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g03183 1902 SUPERFAMILY FAD-linked reductases, C-terminal domain 1150 1261 - -
Vimu1g03183 1902 ProSiteProfiles SWIRM domain profile. 583 682 IPR007526 GO:0005515
Vimu1g03183 1902 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 1410 1493 IPR035441 -
Vimu1g03183 1902 Gene3D - 834 1310 IPR036188 -
Vimu1g03183 1902 SUPERFAMILY Homeodomain-like 581 677 IPR009057 -
Vimu1g03183 1902 Coils Coil 1328 1348 - -
Vimu1g03183 1902 MobiDBLite consensus disorder prediction 1 93 - -
Vimu1g03183 1902 MobiDBLite consensus disorder prediction 1530 1549 - -
Vimu1g03183 1902 MobiDBLite consensus disorder prediction 1570 1584 - -
Vimu1g03183 1902 Pfam SWIRM domain 596 672 IPR007526 GO:0005515
Vimu1g03183 1902 Pfam Flavin containing amine oxidoreductase 842 1312 IPR002937 GO:0016491
Vimu1g03183 1902 SUPERFAMILY FAD/NAD(P)-binding domain 830 1314 IPR036188 -
Vimu1g03183 1902 Gene3D - 582 685 IPR036388 -
Vimu1g03183 1902 PRINTS Adrenodoxin reductase family signature 856 869 - -
Vimu1g03183 1902 PRINTS Adrenodoxin reductase family signature 833 855 - -
Vimu1g03183 1902 MobiDBLite consensus disorder prediction 477 496 - -
Vimu1g03183 1902 MobiDBLite consensus disorder prediction 1508 1584 - -
Vimu1g03183 1902 MobiDBLite consensus disorder prediction 1 77 - -
Vimu1g03183 1902 MobiDBLite consensus disorder prediction 983 1014 - -
Vimu1g03183 1902 Gene3D - 940 1267 - -
Vimu1g03183 1902 PANTHER FLAVIN MONOAMINE OXIDASE 832 1319 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g03183 Vimu-Chr1 43983172 43995936 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SWI or SNF-SWI3 Vimu1g03183 Amino_oxidase 2.4e-104 CL0063
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu1g03183 1 43983172 43995936 Vimu1g03183 1 43983172 43995936 ECH