Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g03182 ATGGCAGAAGACCTTGGAAAGAGCAACCTCGAATCCTCTGCTGCTTCTGTTTCCACGACAACCTCGCGACGCTTTTGGCCTTCCGTCTTACGTTGGATACCCACTTCCACCGACCACATCATCAATTCCGAGAAGCGGCTTCTCTCTCTTGTCAAGACTCCATATGTTCAAGAACAGATTAATATTGGTTCTGGTCCACCTGATTCCAGAGTTAGATGGTTTCGTTCATCGAGCAATGAACCACGGTTTATTAACACCGTCACATTTGACAGTAAGGATGATTCTCCCACTTTGGTAATGGTTCATGGATATGCGGCGTCACAGGGTTTCTTTTTTCGTAATTTTGATGCACTTGCCACTCGTTTCAGAGTTATTGCTATCGATCAACTTGGTTGGGGTGGATCTAGCAGGCCTGACTTTTCATGCAGAAGCACTGAAGGTCAGTGCCAGAAAACTGAGGCGTGGTTCATTGATTCTTTTGAGGAATGGAGAAAAGCCAAAAACCTGAGCAATTTTATACTACTAGGGCATTCTTTTGGTGGTTATGTTGCTTCCAAATACGCACTTAAACACCCCGAACATGTAAAACACTTGATTTTGGTGGGACCTGCTGGATTTTCGTCTGAATCAGAGAGAATTACAAAGTTCTTATCTACATGGAAGGGATCAATCCTGAATCAAATATGGGAATCTAATTTTACACCTCAGAAAATCATCAGGGGTTTAGGTCCTTGGGGTCCTGATATGGTCCGCAAGTATACCAGTGCCAGGTTTGTTACACATACAACTGGAGAAATGCTGACAGAATCTGAATCAAGATTACTGACAGATTATGTTTACCATACTTTAGCAGCAAAAGCTAGTGGCGAGCTGTGCTTAAAATATCTATTTTCATTTGGAGCACTGCCGAGGTCGCCTCTTCTTGACAGGGCATCAGAGTGGAAGGTGCCCACCACTTTCATATATGGTTTTCAGGACTGGATGAATTATGAAGGAGCTCAAAAAGCTCGCAAAGATATGAAGGTTCCCTGTGAAATAATTAGGGTTCCTCAGGCCGGGCACTTTGTGTTCATTGACAACCCAAGTAGCTTTCATTCAGCTGTGTTTTACGCTTGCCGAAGGTTTCTAAGTTCTGATCCAGACCGTGAATCCCTTCCTGAATGGCTAATCTCAGCATAG 1179 0.4377 MAEDLGKSNLESSAASVSTTTSRRFWPSVLRWIPTSTDHIINSEKRLLSLVKTPYVQEQINIGSGPPDSRVRWFRSSSNEPRFINTVTFDSKDDSPTLVMVHGYAASQGFFFRNFDALATRFRVIAIDQLGWGGSSRPDFSCRSTEGQCQKTEAWFIDSFEEWRKAKNLSNFILLGHSFGGYVASKYALKHPEHVKHLILVGPAGFSSESERITKFLSTWKGSILNQIWESNFTPQKIIRGLGPWGPDMVRKYTSARFVTHTTGEMLTESESRLLTDYVYHTLAAKASGELCLKYLFSFGALPRSPLLDRASEWKVPTTFIYGFQDWMNYEGAQKARKDMKVPCEIIRVPQAGHFVFIDNPSSFHSAVFYACRRFLSSDPDRESLPEWLISA 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g03182 392 PANTHER RE40534P-RELATED 29 369 - -
Vimu1g03182 392 SUPERFAMILY alpha/beta-Hydrolases 85 368 IPR029058 -
Vimu1g03182 392 Gene3D alpha/beta hydrolase 82 373 IPR029058 -
Vimu1g03182 392 Pfam alpha/beta hydrolase fold 96 361 IPR000073 -
Vimu1g03182 392 PRINTS Alpha/beta hydrolase fold signature 121 136 IPR000073 -
Vimu1g03182 392 PRINTS Alpha/beta hydrolase fold signature 188 201 IPR000073 -
Vimu1g03182 392 PRINTS Alpha/beta hydrolase fold signature 174 187 IPR000073 -
Vimu1g03182 392 FunFam Probable 1-acylglycerol-3-phosphate O-acyltransferase 82 372 - -
Vimu1g03182 392 PRINTS Epoxide hydrolase signature 121 136 IPR000639 GO:0003824
Vimu1g03182 392 PRINTS Epoxide hydrolase signature 316 332 IPR000639 GO:0003824
Vimu1g03182 392 PRINTS Epoxide hydrolase signature 349 371 IPR000639 GO:0003824
Vimu1g03182 392 PRINTS Epoxide hydrolase signature 174 187 IPR000639 GO:0003824
Vimu1g03182 392 PRINTS Epoxide hydrolase signature 188 201 IPR000639 GO:0003824
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g03182 Vimu-Chr1 43979060 43982554 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu1g03182 1 43979060 43982554 Vimu1g03182 1 43979060 43982554 ECH
Vimu1g03182 1 43979060 43982554 Vimu10g03459 10 44371563 44376660 PCT