Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g03179 ATGAAGATCCAATGCGACGTCTGTGAGAAACACGATGCATCCGTCTTTTGTACCGCCGATGAAGCCGTCCTCTGCGACGGCTGCGACCACCGCATCCACCACGCCAACAAACTAGCCTCCAAACACCAGCGTTTCTCTCTTCTTCGACCCAAACAACACCCTCTATGCGATGTTTGTCAGGAGAGAAGAGCCTTCACGTTCTGTCAGCAAGACAGGGCGATTCTGTGCAGAGAGTGTGACGTGTCGATTCACTCTGCGAATGAACACACCCTTAAGCATGATAGGTTCCTTCTAACTGGTGTTAAACTTTCTGCTTCTTCTTCATCGCAAGAAACCCCTTCTCCTTCAAACTCCGCGCCTGATTCTCTTTTTGACGTTTCGCATCAAAAAACAATACCTTTATCTTCCACCGTCAGTAAGGTTGGTGTTGAACCGGCGGCTTCCACCGGTGCTAGCAGCATATCGGAGTATTTGATAGAGACTCTTCCTGGGTGGCAGGTTGAAGACTTTCTCGATTCATATTCTGTTCCCTTTGGTTTCTGCAAGAGTGATGAAGTGTTACCACGGTTTGATGGTGACATGGAGAGTCATCTGGGTACCTTTTCAACAGAGAACGTGGGAATATGGGTTCCTCAAGCGCCGCCACCTCTTCTGAGTTCTTCACAGATGAATAGAGCGATCGGTCAAAACGAAAACAACATCAAAGGTAACAGATCGAGGTTGAAGGATGATAATTTCACTGTGCCACAGATTAGTCCTCAGTCAAATTCCAGGAGAGGGAGGTTTCTGTGGTAG 795 0.4792 MKIQCDVCEKHDASVFCTADEAVLCDGCDHRIHHANKLASKHQRFSLLRPKQHPLCDVCQERRAFTFCQQDRAILCRECDVSIHSANEHTLKHDRFLLTGVKLSASSSSQETPSPSNSAPDSLFDVSHQKTIPLSSTVSKVGVEPAASTGASSISEYLIETLPGWQVEDFLDSYSVPFGFCKSDEVLPRFDGDMESHLGTFSTENVGIWVPQAPPPLLSSSQMNRAIGQNENNIKGNRSRLKDDNFTVPQISPQSNSRRGRFLW 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g03179 264 Gene3D Classic Zinc Finger 1 93 - -
Vimu1g03179 264 ProSiteProfiles Zinc finger B-box type profile. 51 98 IPR000315 GO:0008270
Vimu1g03179 264 CDD Bbox1_BBX-like 5 47 - -
Vimu1g03179 264 SMART bboxneu5 51 98 IPR000315 GO:0008270
Vimu1g03179 264 SMART bboxneu5 4 47 IPR000315 GO:0008270
Vimu1g03179 264 CDD Bbox1_BBX-like 55 98 - -
Vimu1g03179 264 MobiDBLite consensus disorder prediction 231 264 - -
Vimu1g03179 264 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Vimu1g03179 264 Pfam B-box zinc finger 52 91 IPR000315 GO:0008270
Vimu1g03179 264 MobiDBLite consensus disorder prediction 243 264 - -
Vimu1g03179 264 FunFam B-box zinc finger protein 21 1 96 - -
Vimu1g03179 264 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 256 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g03179 Vimu-Chr1 43965745 43967004 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vimu1g03179 zf-B_box 3.9e-06 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu1g03179 1 43965745 43967004 Vimu10g03451 10 44323442 44324516 PCT