Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g03178 ATGGAAAAAGAATATGATGTGGGAGAGGCGTCTGATGGGGAAGTGGAGAAAGAATTGAGCGGTGATGGGGACGTGACGAATAACAAAAACCCAGTGAGGCGACACGTGGAGAATCCTGGACCCTCCGATGGTCCAAATTCCCGCAGATGTATCGAATTCCAGACTCAGAACATGGCAGTCCCAGATTTTGTTGTTCCCCCGTCTCACATCAGAAACACTAACACCAACACCAACACAACAAACACTCTCAGTTTGAGTCTGAGTCTTCAGAAAAAAAGGGAAGAAAGAGATCAGAAGATCATAGTTGAGACGCCCCCACACGGTCTGGGCACAGTGACAGAAGTGCAACAGAGCATGGCTGGGTTCTTCTCTCTAGGAGGAAGGCATAACAAAGCAGAAGACGAGGAGGATCACAGAGAACACAACAACAACAATAATAACAGTCAATTTTTGTTCAGAAACGTTAACGACGAGATCTACAACACCAACAAGGGCTTCGAGATATGGCCACAATCCTCGTACCACCACAACTTCACCAACTACTACTCCTTCGGTGTGGGCCCTAGTCGCAGAAACAACACCGCCAACAACAGTTCCTCCAACAACGTAAACGACGACGTTTCTGTCTCTTTCTCCGATGAGTCCAACCGCTTCGGCTTCACGGTCATGAGGTCCGGAGGCGCTGTGGGAGGCGGCGGAGGCGCCGGCATGAACTGTCAGGACTGTGGTAACCAGGCCAAGAAAGACTGTTCGCACCTCAGATGCAGAACCTGCTGCAAGAGTCGAGGGTTTCAGTGCCAAACTCACGTTAAGAGCACTTGGGTTCCCGCCGCCAAACGCCGTGAACGACAGCAACAACTCGCTGCCTTGCAGCAACAGAATCAACCACCACAGTTTCGTGGAGATCACTCCAAACGACACAGGGAAAGTATCGAAGCTGTTGCAGCCGGTGGTTCCCTCGCTTGTGCTCCAGTTCCTATCACCACCACAGGGTTGGAGGTGGGTCAATTTCCACCGGAGCTGAACTCTCCAGCGGTGTTTCGATGCGTCAAAGTGAGTGCAATGGATGCACCAGACGAGCGTTACGCGTATCAAACCGCAGTGAACATAGGAGGGCACGTGTTCAAGGGAATTCTCTACGATCAAGGAGTGGACGGTCCTTACGCCAGTGCAGGTTGCGAGGGTTCCTCCGGTGGCGGCGGTGAAGGTCGGCCACTCGCTCTCATGGCCGCCACAACCACAACCACAACAGCTGGAAACCCTTTTGACGCTTCACTCTACCCGGCTCCGATGAATGCTTTCATGGCTGGTACGCAATTCTTCCCACCCCCAAGATCCTAA 1341 0.5227 MEKEYDVGEASDGEVEKELSGDGDVTNNKNPVRRHVENPGPSDGPNSRRCIEFQTQNMAVPDFVVPPSHIRNTNTNTNTTNTLSLSLSLQKKREERDQKIIVETPPHGLGTVTEVQQSMAGFFSLGGRHNKAEDEEDHREHNNNNNNSQFLFRNVNDEIYNTNKGFEIWPQSSYHHNFTNYYSFGVGPSRRNNTANNSSSNNVNDDVSVSFSDESNRFGFTVMRSGGAVGGGGGAGMNCQDCGNQAKKDCSHLRCRTCCKSRGFQCQTHVKSTWVPAAKRRERQQQLAALQQQNQPPQFRGDHSKRHRESIEAVAAGGSLACAPVPITTTGLEVGQFPPELNSPAVFRCVKVSAMDAPDERYAYQTAVNIGGHVFKGILYDQGVDGPYASAGCEGSSGGGGEGRPLALMAATTTTTTAGNPFDASLYPAPMNAFMAGTQFFPPPRS 446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g03178 446 MobiDBLite consensus disorder prediction 130 149 - -
Vimu1g03178 446 MobiDBLite consensus disorder prediction 1 31 - -
Vimu1g03178 446 MobiDBLite consensus disorder prediction 1 49 - -
Vimu1g03178 446 Pfam Domain of unknown function (DUF702) 236 385 - -
Vimu1g03178 446 MobiDBLite consensus disorder prediction 283 305 - -
Vimu1g03178 446 NCBIfam putative zinc finger domain, LRP1 type 238 280 IPR006510 -
Vimu1g03178 446 NCBIfam LRP1 C-terminal domain 336 384 IPR006511 -
Vimu1g03178 446 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 119 417 IPR007818 GO:0003700|GO:0006355
Vimu1g03178 446 MobiDBLite consensus disorder prediction 285 299 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g03178 Vimu-Chr1 43940596 43943151 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Vimu1g03178 DUF702 1.9e-64 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu1g03178 1 43940596 43943151 Vimu10g03447 10 44276968 44278494 PCT