Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g03177 ATGGCTCGCTACTCCCTCTGCGCTCTCCTCCTCTTCGCCGCCGTGGCCGCCGCCGCTGGCGCCAACACCGACGCCGACGACATCCTGATCCGTCAGGTGGTGCCAGAGGGCGAGGTGGAGGACCACCTGCTGAACGCGGAGCACCACTTCTCGAACTTCAAGGCGAAGTTCGGGAAAACCTACGCGACGAAGGAGGAGCACGATCATCGCTTCGGGGTATTCAAGTCAAACCTGCGCAGGGCGAGGCTTCACGCGCAACTCGACCCCTCCGCCGTCCACGGCGTCACCAAATTCTCGGATCTCACTGCGGCGGAGTTCCAGCGCCAGTTCCTCGGTCTCAAACCGCTCGGCTTGCCGGCGAACGCGCAGAAGGCCCCCATCCTCCCCACCAACAATCTCCCAAAAGATTTCGATTGGAGAGACAAAGGAGCCGTCACTAACGTCAAGGACCAAGGTGCGTGTGGATCGTGTTGGTCTTTCAGTACCACGGGGGCATTGGAAGGAGCTCACTTTTTGGCTACTGGTGAGCTCGTGAGTCTTAGTGAGCAACAGCTTGTGGATTGCGACCACGTGTGTGATCCAGAAGAATATGGAGCATGTGACTCAGGCTGTAATGGTGGTTTAATGAACAACGCATTTGAGTACATACTTGGGGCTGGGGGAGTACAGAGAGAAGAGGACTATCCATACGCTGGAAGAGATAGCTCCTGCAAATTTGATAAAAGCAAAATTGCAGCTTCTGTAGCTAATTACAGTGTGATTTCCCTTGATGAGGATCAAATTGCTGCAAATCTTGTGAAGAATGGCCCTCTTGCAGTTGGTATCAATGCAGTTTATATGCAGACATACATTGGTGGTGTCTCATGTCCATACATCTGTGCGAAGCGTTTGGATCATGGGGTTCTTTTAGTGGGTTATGGTGAAAGTGGATATGCTCCCATTCGTTTTAAGGAAAAGCCTTACTGGATCATTAAGAATTCGTGGGGGGAGAGCTGGGGAGAGAATGGATACTACAAGATCTGCAGAGGTCAAAATGCATGTGGAGTAGATTCCATGGTCTCAACTGTAGGTGCTATACATGCATCCAGGCAGTAA 1095 0.5233 MARYSLCALLLFAAVAAAAGANTDADDILIRQVVPEGEVEDHLLNAEHHFSNFKAKFGKTYATKEEHDHRFGVFKSNLRRARLHAQLDPSAVHGVTKFSDLTAAEFQRQFLGLKPLGLPANAQKAPILPTNNLPKDFDWRDKGAVTNVKDQGACGSCWSFSTTGALEGAHFLATGELVSLSEQQLVDCDHVCDPEEYGACDSGCNGGLMNNAFEYILGAGGVQREEDYPYAGRDSSCKFDKSKIAASVANYSVISLDEDQIAANLVKNGPLAVGINAVYMQTYIGGVSCPYICAKRLDHGVLLVGYGESGYAPIRFKEKPYWIIKNSWGESWGENGYYKICRGQNACGVDSMVSTVGAIHASRQ 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g03177 364 ProSitePatterns Eukaryotic thiol (cysteine) proteases asparagine active site. 321 340 IPR025661 -
Vimu1g03177 364 Gene3D Cysteine proteinases 19 356 - -
Vimu1g03177 364 SUPERFAMILY Cysteine proteinases 47 355 IPR038765 -
Vimu1g03177 364 ProSitePatterns Eukaryotic thiol (cysteine) proteases histidine active site. 297 307 IPR025660 -
Vimu1g03177 364 Pfam Papain family cysteine protease 133 355 IPR000668 GO:0006508|GO:0008234
Vimu1g03177 364 PRINTS Papain cysteine protease (C1) family signature 321 327 IPR000668 GO:0006508|GO:0008234
Vimu1g03177 364 PRINTS Papain cysteine protease (C1) family signature 151 166 IPR000668 GO:0006508|GO:0008234
Vimu1g03177 364 PRINTS Papain cysteine protease (C1) family signature 299 309 IPR000668 GO:0006508|GO:0008234
Vimu1g03177 364 Pfam Cathepsin propeptide inhibitor domain (I29) 50 106 IPR013201 -
Vimu1g03177 364 PANTHER CYSTEINE PROTEASE FAMILY C1-RELATED 46 349 IPR013128 GO:0008234
Vimu1g03177 364 ProSitePatterns Eukaryotic thiol (cysteine) proteases cysteine active site. 151 162 IPR000169 -
Vimu1g03177 364 SMART Inhibitor_I29_2 50 106 IPR013201 -
Vimu1g03177 364 FunFam Cysteine protease RD19A 28 357 - -
Vimu1g03177 364 SMART pept_c1 133 357 IPR000668 GO:0006508|GO:0008234
Vimu1g03177 364 CDD Peptidase_C1A 134 356 IPR039417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g03177 Vimu-Chr1 43930720 43933054 Dispersed/Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu1g03177 1 43930720 43933054 Vimu10g03444 10 44258500 44260028 PCT