LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vimu1g03169	ATGCTGAAATCAGGCATGAGAATGAATGCTAGTAAGCAGGTGAAAAAATCTGCAAAAGCGAGTTCCAGAAAGGGGTGTATGAGAGGCAAAGGAGGCCCTGAGAATGCCAGTTGCACCTTCAAAGGTGTGAGGCAGAGAACTTGGGGCAAATGGGTGGCTGAGATCCGTGAGCCTAACGGTGGTGCACGCCTCTGGCTAGGCACATTTGATAACTCTGTAGAGGCTGCCATGGCTTATGACTGTGCAGCACGTCAGCTCTACGGATCTGATGCAAAACTCAACCTCCCAGAGCTTGCTATGGCCTTGGCCTTGAATTTCCAGTTTCCACCACCAAACCCTCAGATCCCTCACATGCCACCATCACCACAGCACATTTCCAATCTCCCCCCCTTTGATTTCATCAACAACCTCACCGATCACACCAACATCATGTTCAACCCTGTGCTCTCCATGAATCCTCAGCATGCAATTGCTGATTCTGCACCAGTGTATGCCAGCGACTCGCATGTCGCAATTCCCTATGAATCCACCACCATCCCGATGGCGATTCACCCCTCCAACCCCTTGGATATCAACGACGACAAGGTTGATCCTTTTGGGGGGTCATCCAATGTCATTCTTGACCCTATGTTTGAGGATTCCATCTGGGCTGAAGCTGCTATGTCTCTTGGTTTCCCTCTGATACCAGATGCTGCAGGAATTAATGAAGCTGAAACCTTTCTTGAAGTGGGTCCTTGGGACTCTCTGCAAACTCCCCCGTGCATGTAA	768	0.5013	MLKSGMRMNASKQVKKSAKASSRKGCMRGKGGPENASCTFKGVRQRTWGKWVAEIREPNGGARLWLGTFDNSVEAAMAYDCAARQLYGSDAKLNLPELAMALALNFQFPPPNPQIPHMPPSPQHISNLPPFDFINNLTDHTNIMFNPVLSMNPQHAIADSAPVYASDSHVAIPYESTTIPMAIHPSNPLDINDDKVDPFGGSSNVILDPMFEDSIWAEAAMSLGFPLIPDAAGINEAETFLEVGPWDSLQTPPCM	255

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vimu1g03169	255	MobiDBLite	consensus disorder prediction	1	33	-	-
	Vimu1g03169	255	Gene3D	AP2/ERF domain	39	97	IPR036955	GO:0003700\|GO:0006355
	Vimu1g03169	255	SMART	rav1_2	39	102	IPR001471	GO:0003700\|GO:0006355
	Vimu1g03169	255	SUPERFAMILY	DNA-binding domain	39	96	IPR016177	GO:0003677
	Vimu1g03169	255	ProSiteProfiles	AP2/ERF domain profile.	39	96	IPR001471	GO:0003700\|GO:0006355
	Vimu1g03169	255	PANTHER	DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C	12	111	-	-
	Vimu1g03169	255	Pfam	AP2 domain	39	88	IPR001471	GO:0003700\|GO:0006355
	Vimu1g03169	255	CDD	AP2	38	98	IPR001471	GO:0003700\|GO:0006355
	Vimu1g03169	255	FunFam	Ethylene-responsive transcription factor 2	38	97	-	-
	Vimu1g03169	255	PRINTS	Ethylene responsive element binding protein signature	62	78	IPR001471	GO:0003700\|GO:0006355
	Vimu1g03169	255	PRINTS	Ethylene responsive element binding protein signature	40	51	IPR001471	GO:0003700\|GO:0006355

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vimu1g03169	Vimu-Chr1	43870883	43871680	Wgd

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	AP2 or ERF-ERF	Vimu1g03169		AP2	2.8e-13	CL0081

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Vimu1g03169	1	43870883	43871680	Vimu1g03169	1	43870883	43871680	ECH
	Vimu1g03169	1	43870883	43871680	Vimu10g03441	10	44209133	44209740	PCT