Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g03168 GTGAACATAAGCTCATTTTCATTTCTAACGAAATTTCGGATAATGGTGTCTCTGATTGCGCCACCTTCTTCGTCTTCGAGCATTCAATTGCGCGAAACTCGTTTCTTCTCCACTCTCTTCATTCCACCAAGGAGTGTCAGATTCCTGCAAAACACACGAAACCACGAAAATCACAAATGGAAAACGGTATGGTGCGGCGTTACCAGCGCCGGGGCGTCTCCTCCGCCGTCGTTGATGAAGGAGCCTCACAAGTTCTTCGACCACGTAATTATCACTGTTCGGGCGGGTGACGGAGGCCACGGCGCGGTGCTGAATCACAGAGAGAAGAACGAGCTGGAGCAGGGTAAAACGAAGAAGAAAGGGAAAGGCTCGTTGAAGAGGGACTTCGACGGGTCGCTCATACTACCTACGGGAGGGCACGGAGGGGACGTGGTGATCTACGCTGACGAGGCCAAAGACACGTTGCTGGAGTTTCACAACAAGAGCAGGTATCACGCCAAGCGCGGTGGCAACGTTGGTGCGATGGGCGTTTTGACGTCGATGTTGCGCGATGGACTTGTGGCTCCCACGATGCGCATTCCTGTTCCTGTAGGTACAGTTGTGAAAAGCAAACGAGGAAAGGTGTTGGCTGATCTAGCACAACCTGGCGATGAAGTTCTTGTTGCCAGGGGAGGACAAGGAGGGATTAGTTTGTTGGAAATGCCACAGCGTCAAAGAAAAAAGATGATGGCTCTGACAACTAACGTGATGAGGGATGACTCAGACAAGATTTTAGTTCACGGTCAACCTGGAGAGGAAGTTAAGTTGGAGTTGATCCTGCGAGTTGTAGCCGACGTTGGTCTGATTGGACTTCCAAATGCTGGGAAATCAACACTTCTGGCAGCCATTACACTTGCTAAACCTGATATTGCTGATTACCCTTTTACAACATTAATGCCAAATCTTGGACGCCTAGGTGGTGATCCCAGCTTGGGGGCAGGAATGTATTCATCAGAAGCTACATTGGCAGATTTGCCTGGTCTTATTGAAGGCGCTCACTTAGGAAAGGGTCTTGGTCGTAATTTTTTGAGGCACCTCAGAAGGACCCGGCTTTTAGTCCATGTTGTTGATGCTGCCACCGAGAGTCCTGTAAATGACTACAGAACGGTCAGAGAAGAGTTGCGCATGTATAATCCTGCTTACCTTGAGAGACCGTATGTTGTAGTTTTGAATAAGATTGACCTACCAGAGGCAAACGACAGACTTCCATCGTTGATTCAAGAAATCATGAGAATTGGCAACCGTGATGCTCAATTGTCTGATGAAACTGACACGAAGGAGAAAAAACTTGAGGACTATCCTAGACCTCTCTCTGTTGTTGGAGTCAGTGTTCTAAAGGGCATCCAGATTAATGAAATGTTAAAGGAGATAAGGTCTGCTTTAAAGAAATGCTCGGGTTCTAGTGAAACATTGATTTCTACTTGA 1464 0.4781 VNISSFSFLTKFRIMVSLIAPPSSSSSIQLRETRFFSTLFIPPRSVRFLQNTRNHENHKWKTVWCGVTSAGASPPPSLMKEPHKFFDHVIITVRAGDGGHGAVLNHREKNELEQGKTKKKGKGSLKRDFDGSLILPTGGHGGDVVIYADEAKDTLLEFHNKSRYHAKRGGNVGAMGVLTSMLRDGLVAPTMRIPVPVGTVVKSKRGKVLADLAQPGDEVLVARGGQGGISLLEMPQRQRKKMMALTTNVMRDDSDKILVHGQPGEEVKLELILRVVADVGLIGLPNAGKSTLLAAITLAKPDIADYPFTTLMPNLGRLGGDPSLGAGMYSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVVDAATESPVNDYRTVREELRMYNPAYLERPYVVVLNKIDLPEANDRLPSLIQEIMRIGNRDAQLSDETDTKEKKLEDYPRPLSVVGVSVLKGIQINEMLKEIRSALKKCSGSSETLIST 487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g03168 487 Gene3D GTP1/OBG domain 84 275 IPR036726 -
Vimu1g03168 487 ProSiteProfiles Obg domain profile. 83 276 IPR006169 -
Vimu1g03168 487 PRINTS GTP1/OBG GTP-binding protein family signature 300 318 IPR006073 GO:0005525
Vimu1g03168 487 PRINTS GTP1/OBG GTP-binding protein family signature 352 370 IPR006073 GO:0005525
Vimu1g03168 487 PRINTS GTP1/OBG GTP-binding protein family signature 279 299 IPR006073 GO:0005525
Vimu1g03168 487 PRINTS GTP1/OBG GTP-binding protein family signature 335 350 IPR006073 GO:0005525
Vimu1g03168 487 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 278 476 IPR027417 -
Vimu1g03168 487 Pfam GTP1/OBG 87 274 IPR006169 -
Vimu1g03168 487 ProSiteProfiles OBG-type guanine nucleotide-binding (G) domain profile. 277 475 IPR031167 GO:0005525
Vimu1g03168 487 Pfam 50S ribosome-binding GTPase 278 405 IPR006073 GO:0005525
Vimu1g03168 487 PANTHER DEVELOPMENTALLY REGULATED GTP-BINDING PROTEIN-RELATED 80 472 IPR045086 GO:0003924|GO:0005525
Vimu1g03168 487 ProSitePatterns GTP1/OBG family signature. 337 350 IPR006074 GO:0005525
Vimu1g03168 487 CDD Obg 277 474 IPR031167 GO:0005525
Vimu1g03168 487 SUPERFAMILY Obg GTP-binding protein N-terminal domain 84 241 IPR036726 -
Vimu1g03168 487 Gene3D - 276 482 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g03168 Vimu-Chr1 43863974 43869097 Dispersed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu1g03168 1 43863974 43869097 Vimu1g03168 1 43863974 43869097 ECH