Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g03162 ATGGAGGGACAAGTCATTGATGTTAAGACCGTTGACTCGTGGAAAGACCATTTCCAGAAGGGAAAGGACTCCATAAAGCTGGTTGTGGTGTATTTTACTGCTTCCTGGTGTGGTCCATGCCGTATTATAGCCCCAATTTTTGAAGAGCTTGCTAAGAATATGCCTCATGTAATCTTCCTCAAGGTGGATGTAGATGAACTGAGTAGTGTTGCTAAGGAATGGTCCATTAGTGCTATGCCAACCTTCTTGTTCTTCAAAGAAGGTGAGCGGGTGGACGAGGTTGTGGGTGGTAACCCGAGTAAGCTGCGACAAACCGTAGAGAAGCATGCTGCTCCTGTTACTGTTGCTTGA 351 0.4615 MEGQVIDVKTVDSWKDHFQKGKDSIKLVVVYFTASWCGPCRIIAPIFEELAKNMPHVIFLKVDVDELSSVAKEWSISAMPTFLFFKEGERVDEVVGGNPSKLRQTVEKHAAPVTVA 116
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g03162 116 ProSiteProfiles Thioredoxin domain profile. 1 111 IPR013766 -
Vimu1g03162 116 SUPERFAMILY Thioredoxin-like 3 111 IPR036249 -
Vimu1g03162 116 Pfam Thioredoxin 10 107 IPR013766 -
Vimu1g03162 116 Gene3D Glutaredoxin 1 114 - -
Vimu1g03162 116 CDD TRX_family 16 107 - -
Vimu1g03162 116 PANTHER THIOREDOXIN 5 108 - -
Vimu1g03162 116 FunFam Thioredoxin 4 111 - -
Vimu1g03162 116 PRINTS Thioredoxin family signature 28 36 - -
Vimu1g03162 116 PRINTS Thioredoxin family signature 36 45 - -
Vimu1g03162 116 PRINTS Thioredoxin family signature 75 86 - -
Vimu1g03162 116 ProSitePatterns Thioredoxin family active site. 29 47 IPR017937 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g03162 Vimu-Chr1 43840523 43841394 Dispersed/Tandem
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu1g03162 1 43840523 43841394 Vimu1g03162 1 43840523 43841394 ECH
Vimu1g03162 1 43840523 43841394 Vimu10g03437 10 44185282 44186562 PCT