Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g03160 ATGGAAACCATCTCAGTTTCCAAGCTTCTAGTACTTGTTTTCACCATCTTGTTTTTGGGTTCTGAGTTCATTCATTGCAGTGTCACTTATGATAGGAAGGCCATTATCATCAATGGCCAAAGGAGAATCCTCATATCTGGTTCCATTCACTACCCCAGAAGCACTCCTGAAATGTGGGAGGATCTAATTAGGAAGGCCAAAGGTGGAGGTCTGGATGCCATTGATACTTATGTCTTCTGGAATGTTCATGAACCATCTCCTGGCATTTACAATTTTGAAGGGAGGTACGATCTGGTACGGTTCATTAAGACAGTGCAGAGAGTGGGGCTCTATGTGCATCTTCGGATTGGACCTTATGTGTGTGCTGAGTGGAACTTTGGAGGGTTTCCTGTTTGGTTGAAGTATGTTCCTGGCATCAGCTTCAGAACGGATAATGGCCCTTTCAAGGCTGCAATGCAAGGTTTCACTCAGAAGATAGTCCAGATGATGAAGAATGAAAAGCTATTTCAGTCTCAGGGTGGTCCAATCATTCTTTCTCAGATTGAAAATGAGTATGGATCAGAAAGCAAGCAATTGGGAGGTGCTGGTTATGCCTACACAAACTGGGCTGCAAAGATGGCTGTTGGATTGAACACAGGAGTTCCCTGGGTGATGTGCAAGCAAGACGATGCCCCAGATCCAGTGATAAATGCCTGTAATGGTTTCTATTGTGATTATTTCTCCCCAAATAAACCATACAAGCCTACCCTTTGGACTGAATCTTGGAGTGGCTGGTTTACAGAGTTTGGTGGTCCAATTTACCAGCGACCAGTGCAGGATCTAGCTTTTGCAGTTGCTCGTTTCATTCAAAAGGGTGGCTCATACATCAATTATTACATGTACCATGGAGGAACTAATTTTGGAAGATCAGCTGGAGGGCCATTCATTACCACAAGCTATGACTATGATGCTCCAATTGATGAATATGGTTTGATCAGGGAACCTAAATATGGTCATTTGATGGACCTTCATAAAGCTATTAAGCAATGTGAACGTGCTTTGGTTTCTTCAGATCCCACTGTCACATCATTAGGAACGTATGAGCAGGCTCATGTGTTCTCTTCAAAAAATGGAGCATGTGCAGCTTTTCTGGCAAACTACCATTCTAATTCTGCTGCAAGAGTGACCTTCAATAACAGGAAATATGACTTGCCTCCTTGGTCCATAAGCATCCTCCCTGATTGTAAAACAGATGTTTTCAACACTGCAAGAGTGAGGTTTCAAACTACAAAGATTCAAATGTTGCCTAGCAACTCTAAGTTGTTCTCATGGGAGACGTATGAGGAAGATGTATCTTCACTATCAGAAAGTTCAAAGATCACAGCTTCTGGACTATTAGAACAGCTAAATGCCACCAGAGACACTAGTGACTATCTATGGTATATAACCAGCGTTGACATCAGTTCATCAGAATCCTTTCTTAGAGGGGGGAACAAGCCCAGCATCAGTGTGCATTCAGCAGGCCATGCTGTCCACGTGTTCATCAACGGTCAATTTTTAGGCTCCGCTTTTGGGACAAGTGAAGACAGAAGTTGCACATTCAATGGCCCTGTCAACCTACGTGCTGGAACCAATAAAATAGCCCTTCTCAGTGTAGCTGTTGGATTACCCAATGTTGGATTCCATTTTGAAACATGGAAAGCTGGGATCACAGGAGTTTTGCTTCATGGACTTGACCATGGACAGAAGGATTTGACGTGGCAGAAATGGTCATACCAGATTGGCCTAAAAGGGGAGGCTATGAATTTGGTGTCTCCAAATGGGGTTTCATCTGTTGACTGGGTGAGAGACTCTCTTGATGTCCGAAGCCAGTCACAGTTGAAATGGCACAAGGCTTATTTCAACGCACCTGATGGAGTTGAACCATTGGCCTTGGACCTTAGCAGTATGGGAAAGGGTCAGGTATGGATCAATGGACAAAGCATAGGAAGATATTGGATGGTTTATGCAAAGGGTGCTTGTAGTTCTTGCAACTATGCTGGGACATACCGGCCTGCAAAATGCCAACTTGGTTGTGGACAGCCTACGCAACAATGGAGTTTGGTTCAACCATTGATGTGTTTATCTCCAATTCCACATTCTCCTGATCTTGCATCTGATGGAGAGTGA 2148 0.4381 METISVSKLLVLVFTILFLGSEFIHCSVTYDRKAIIINGQRRILISGSIHYPRSTPEMWEDLIRKAKGGGLDAIDTYVFWNVHEPSPGIYNFEGRYDLVRFIKTVQRVGLYVHLRIGPYVCAEWNFGGFPVWLKYVPGISFRTDNGPFKAAMQGFTQKIVQMMKNEKLFQSQGGPIILSQIENEYGSESKQLGGAGYAYTNWAAKMAVGLNTGVPWVMCKQDDAPDPVINACNGFYCDYFSPNKPYKPTLWTESWSGWFTEFGGPIYQRPVQDLAFAVARFIQKGGSYINYYMYHGGTNFGRSAGGPFITTSYDYDAPIDEYGLIREPKYGHLMDLHKAIKQCERALVSSDPTVTSLGTYEQAHVFSSKNGACAAFLANYHSNSAARVTFNNRKYDLPPWSISILPDCKTDVFNTARVRFQTTKIQMLPSNSKLFSWETYEEDVSSLSESSKITASGLLEQLNATRDTSDYLWYITSVDISSSESFLRGGNKPSISVHSAGHAVHVFINGQFLGSAFGTSEDRSCTFNGPVNLRAGTNKIALLSVAVGLPNVGFHFETWKAGITGVLLHGLDHGQKDLTWQKWSYQIGLKGEAMNLVSPNGVSSVDWVRDSLDVRSQSQLKWHKAYFNAPDGVEPLALDLSSMGKGQVWINGQSIGRYWMVYAKGACSSCNYAGTYRPAKCQLGCGQPTQQWSLVQPLMCLSPIPHSPDLASDGE 715
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g03160 715 SUPERFAMILY Galactose-binding domain-like 582 693 IPR008979 -
Vimu1g03160 715 Pfam Glycosyl hydrolases family 35 35 339 IPR031330 -
Vimu1g03160 715 FunFam Beta-galactosidase 23 343 - -
Vimu1g03160 715 SUPERFAMILY (Trans)glycosidases 27 344 IPR017853 -
Vimu1g03160 715 SUPERFAMILY Galactose-binding domain-like 402 565 IPR008979 -
Vimu1g03160 715 PANTHER BETA-GALACTOSIDASE RELATED 18 697 IPR001944 GO:0004553|GO:0005975
Vimu1g03160 715 Pfam Beta-sandwich domain in beta galactosidase 347 418 IPR041392 -
Vimu1g03160 715 Gene3D Glycosidases 24 344 - -
Vimu1g03160 715 FunFam Beta-galactosidase 292 420 - -
Vimu1g03160 715 PRINTS Glycosyl hydrolase family 35 signature 618 632 IPR001944 GO:0004553|GO:0005975
Vimu1g03160 715 PRINTS Glycosyl hydrolase family 35 signature 287 302 IPR001944 GO:0004553|GO:0005975
Vimu1g03160 715 PRINTS Glycosyl hydrolase family 35 signature 645 661 IPR001944 GO:0004553|GO:0005975
Vimu1g03160 715 PRINTS Glycosyl hydrolase family 35 signature 59 77 IPR001944 GO:0004553|GO:0005975
Vimu1g03160 715 PRINTS Glycosyl hydrolase family 35 signature 171 186 IPR001944 GO:0004553|GO:0005975
Vimu1g03160 715 PRINTS Glycosyl hydrolase family 35 signature 307 323 IPR001944 GO:0004553|GO:0005975
Vimu1g03160 715 PRINTS Glycosyl hydrolase family 35 signature 114 133 IPR001944 GO:0004553|GO:0005975
Vimu1g03160 715 PRINTS Glycosyl hydrolase family 35 signature 250 265 IPR001944 GO:0004553|GO:0005975
Vimu1g03160 715 PRINTS Glycosyl hydrolase family 35 signature 38 55 IPR001944 GO:0004553|GO:0005975
Vimu1g03160 715 ProSitePatterns Glycosyl hydrolases family 35 putative active site. 173 185 IPR019801 GO:0004553|GO:0005975
Vimu1g03160 715 FunFam Beta-galactosidase 446 581 - -
Vimu1g03160 715 FunFam Beta-galactosidase 582 670 - -
Vimu1g03160 715 Gene3D - 587 661 - -
Vimu1g03160 715 Gene3D - 457 586 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g03160 Vimu-Chr1 43821507 43827017 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu1g03160 1 43821507 43827017 Vimu7g03011 7 25371494 25376534 ECH
Vimu1g03160 1 43821507 43827017 Vimu1g03160 1 43821507 43827017 ECH
Vimu1g03160 1 43821507 43827017 Vimu10g03436 10 44177138 44181862 PCT