Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g03159 ATGTATTCAAACCAAGCGTTTTCTTCAGGGTCCTATGCAGATATGTTGTCTGGGAATCCCCTTTTACCTCATAACTACAGTGAAACTGTTGGAGGACAAAATGAGTTGAAGTTCATGACATCCATGAGGGACACAATGACTGTGCAGTCTATTGATGGGCATTCAAATGCGGCCCCTACAGCTGATCAAGACTCTTTTCCCAATGCTGGAGATTCCCATTCCCATATTGTTCCAAGGACAACACAATTGGGACTTGTGGACAGTGAGCAAAATGTACAGAACCAAGGCTTGTCTCTTAGCCTTGGCTCAGTGATGCCTTCTATTGCATCAGTCCCTACCTTTCCATACCAATATCCTGGCGCAGGTTTCTCTTCACTAATGACTGCTTCTGTTCCAAATTTAAAGGGAACTTCATCTCTCAAAGATGATGAAGCCAGCCTACAAAGGGAACTGAGAAATGCCGAGTGCATGGCATCTTTGGCTTCTTCTGGCTTTCACAAAAGGGAGGGTTTGTTGTATACTCCACAACACCCTTCAATGTGCCTCAGTGAAGGGCAAAGTGATGGGTCACTAGGCTTCTCCAGCAGTGTCTTGAACTCACAATATCTCAAGGCAGCACAGGAGTTGCTTGATGAAATAGTTAATGTTCGAAAGGCTTTGAAGCAAACAGGTTTAGAGAAGCAACAGGGTTTCCGTGATATTGGTTTAGATGGCTCCAAAGATTCTGATGGAAAATCTACCAGCCAATCGGGGCAGGTATCTTCATGTCCCAATAATTCTGCTGCAAACACTTCATGTGAGCTCTCACCTGCAGAACGACAGAATTTATTGGACAAGAAGACAAAACTTTTATCCATGTTGGACGAGGTTGATAAAAGATACAGACAGTACTGCCACCAGATGCAGATGGTGGTTTCATCTTTTGATATGGTTGCTGGTTGTGGAGCAGCTGAACCTTACACCGCGCTAGCCTTGCGCACAATATCACGCCACTTTCGGTGTTTGCGTGATGCCATCAGTGGCCAAATTCAAGTTACTCAAAGGAGCCTTGGAGAACAAGAGGGAATACCTCGTCTACGCTATGTTGATCAGCAGCTTCGGCAGCAAAAGGCCCTTCAGCAACTTGGTGTAATGCGACAAGCTTGGAGGCCTCAGAGGGGACTTCCTGAAACCTCTGTTTCAATTCTTCGAGCATGGCTCTTTGAGCATTTCCTTCATCCTTATCCAAAGGATTCAGAGAAAATTATGCTGGCTAGGCAAACTGGCTTAACAAGAAACCAGGTGGCAAATTGGTTCATTAATGCAAGGGTGCGTCTTTGGAAGCCAATGGTTGAAGAAATGTACAAAGAAGAATTTGGCGATTCCGAGATGAGCAGCAATCTATTGCCATCAGAGAACGCAGTGAAAGCCCCAAGAGATGATGTTCAATCTTCTGACAGTAAAAGGGAAGAGTCCCAGGACAACTTAATAACAGTTGATGATAGTATTATTCAGCATCATGGGTTGAAGTTGGATCATGCCTCGGAGTTGGAGAGAGGGATTCAAAGTAGTGATCATGGAGAAAATGCCATGGATCCTAGAATTGGGAAACTGCAGGATGGCCAAAGGTTCAACATCAACAACAGCAACAGTTCTTATTATGGGGAAGGCTGCATAATTGCTCCTACTACTGCCACATATGATTTGTCAGAGTTAGGTAACATTGGTGTAGGTGGACAGGTGTCACTAGCATTGGAATTGAGGAACTGTGAAAGTGAAGGGTTTGGCGTGTCCAATGATGACATGCATAGAAGACGTAAGAAAACATTGGCTTCTTCCCCAGAGGCTGATCTGCTAGATTACCATTTCACAGACCAAGGAAAGCAGCAAAACAAGTTTGGCAATCCTCACCTATTACACGAATTTGTTGTGTGA 1914 0.4446 MYSNQAFSSGSYADMLSGNPLLPHNYSETVGGQNELKFMTSMRDTMTVQSIDGHSNAAPTADQDSFPNAGDSHSHIVPRTTQLGLVDSEQNVQNQGLSLSLGSVMPSIASVPTFPYQYPGAGFSSLMTASVPNLKGTSSLKDDEASLQRELRNAECMASLASSGFHKREGLLYTPQHPSMCLSEGQSDGSLGFSSSVLNSQYLKAAQELLDEIVNVRKALKQTGLEKQQGFRDIGLDGSKDSDGKSTSQSGQVSSCPNNSAANTSCELSPAERQNLLDKKTKLLSMLDEVDKRYRQYCHQMQMVVSSFDMVAGCGAAEPYTALALRTISRHFRCLRDAISGQIQVTQRSLGEQEGIPRLRYVDQQLRQQKALQQLGVMRQAWRPQRGLPETSVSILRAWLFEHFLHPYPKDSEKIMLARQTGLTRNQVANWFINARVRLWKPMVEEMYKEEFGDSEMSSNLLPSENAVKAPRDDVQSSDSKREESQDNLITVDDSIIQHHGLKLDHASELERGIQSSDHGENAMDPRIGKLQDGQRFNINNSNSSYYGEGCIIAPTTATYDLSELGNIGVGGQVSLALELRNCESEGFGVSNDDMHRRRKKTLASSPEADLLDYHFTDQGKQQNKFGNPHLLHEFVV 637
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g03159 637 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 75 477 - -
Vimu1g03159 637 SMART prehox3 191 341 IPR006563 -
Vimu1g03159 637 MobiDBLite consensus disorder prediction 472 488 - -
Vimu1g03159 637 ProSiteProfiles 'Homeobox' domain profile. 379 442 IPR001356 GO:0003677
Vimu1g03159 637 MobiDBLite consensus disorder prediction 231 268 - -
Vimu1g03159 637 SUPERFAMILY Homeodomain-like 383 449 IPR009057 -
Vimu1g03159 637 MobiDBLite consensus disorder prediction 452 488 - -
Vimu1g03159 637 Coils Coil 203 223 - -
Vimu1g03159 637 MobiDBLite consensus disorder prediction 52 72 - -
Vimu1g03159 637 CDD homeodomain 382 443 IPR001356 GO:0003677
Vimu1g03159 637 SMART HOX_1 382 446 IPR001356 GO:0003677
Vimu1g03159 637 MobiDBLite consensus disorder prediction 241 268 - -
Vimu1g03159 637 Pfam Homeobox KN domain 399 438 IPR008422 GO:0003677|GO:0006355
Vimu1g03159 637 Gene3D - 379 456 - -
Vimu1g03159 637 Pfam Associated with HOX 197 340 IPR006563 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g03159 Vimu-Chr1 43796025 43802266 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Vimu1g03159 POX 4e-51 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu1g03159 1 43796025 43802266 Vimu1g03159 1 43796025 43802266 ECH