Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g03158 ATGTATTCAAACCAAGCGTTTTCTTCAGGGCCCTATGCAGATATGTTGTCTGGGAATCCTCTTTTACCCCATAACTACAGTGAAACTGTTGGAGGACAAAATGAGTTGAAGTTCATGACATCCATGAGGGACACAGTGACTGTGCAGTCTATTGATGGGCATTCAAATGCGGCCCCTACAGTTGGTCAAGACTCTTTTTCCAATGCTGGAGATTCCCATTCCCATCTTGTTCCAAGGACAACACAATTGGGACTTGTGGACAGTGAGCAAAATGTACAGAACCAAGGCTTGTCTCTTAGCCTTGGCTCAGTGATGCCTTCTATTGCATCAGTCCCTACCTTTCCATATCAGTATCCTGGCGCAGGCTTCTCTTCACTAATGACTGGTTCTGTTCCAAATTTAAAGGTAACTTCATCTCTAAAAGATGATGAAGCCAGCCTACAAAGGGAATTGAGAAATGCCGAGTGCATGGCATCTTTGGCTTCTTCTGGTTTTCACAAAAGGGAGGGTTTGTTGTATACTCCACAACACCCTTCAATGTGCCTCAGTGAAGGCCAAGATGGATCACTAGGCTTCTCCAGCAGTGTCTTGAGCCCACAATACCTCAAGGCAGCACAGGAGTTGCTTGATGAAATAGTTAATGTTCGAAAGGCTTTGAAGCAAACAGGTTTAGATAAGCAACGGAGTTTCCGTGATATTGGTTTAGATGGCTCCAAAGATTCTGATGGAAAATCTACCAGCCAATCGGGGCAGATATCTTCATGTCCCAACAGTTCTGCTGCAAACTCCTCATGTGAACTCTCACCGGCAGAACGACAGAATTTGTTGGACAAAAAGACAAAACTTTTGACCATGTTAGATGAGGTTGATAAAAGATACAGACAGTACTGCCACCAGATGCAGATTGTGGTTTCATCTTTTGATATGGTTGCTGGTTGTGGAGCGGCTGAACCATACACTGCACTGGCCTTGAGTACAATATCACGCCACTTTCGATGTTTACGTGATGCCATTAGTGGTCAAATTCAAGTGACTCAAAGGAGCCTTGGAGAACAAGAGGGAATACCTCGTCTACGCTATGTTGATCAGCAGCTTCGGCAGCAAAAGGCGCTTCAGCAACTTGGTGTAATACGACAAGCTTGGAGGCCTCAGAGGGGACTTCCTGAAACCTCTGTTTCAATACTTAGAGCATGGCTCTTTGAGCACTTCCTCCATCCTTATCCAAAGGATTCAGAGAAAATTATGCTGGCAAGGCAAACTGGCTTAACAAGAAACCAGGTGGCAAATTGGTTCATTAATGCAAGGGTGCGGCTTTGGAAGCCAATGGTTGAAGAAATCTATAAGGAAGAGTTTGGCGATTCTGAGATGAGCAGCAATATATTATCATCAGAGAACACACTGAAAGCTCCAAGAGATGATGTTCAATCTCCTGACAGCAAAAGGGAAGAGTCCCAGGACAACATAATAACAGTAGATGAAAGTGATATTCAGCATCATGGGTTGAAGTTGGATCATGATTCAGAGTTGGACAGAGGAATCCGAGGTAGTGATCATGGAAAAAATGGCTTGGATCCTAGAATTGGGAGACTGCAGGGTGACCAAAGGTTCAACATTAACAACAGCAACAGTTCTTATTATGGGGAAGGCTGCATAATTGCTTCTGCTCCTGCCACATACGATTTATCTGAGTTAGGTAACATTGGTGTTGGTGGACAGGTGTCACTAGCATTGGAATTGAGGAACTGTGATAGTGAAGGGTTTGGCGGGTCCAATGATGACATGCATAGAAGACGTAAGAAAACATTGGCTTCTTCCTCAGAGGCTGATTTGATAGATTACCATTTCACAGACCAAGAAAAGCAACAAAACAAGTTTGGCAATCCTCACCTATTGCACGAGTTTGTTGTGTGA 1911 0.4401 MYSNQAFSSGPYADMLSGNPLLPHNYSETVGGQNELKFMTSMRDTVTVQSIDGHSNAAPTVGQDSFSNAGDSHSHLVPRTTQLGLVDSEQNVQNQGLSLSLGSVMPSIASVPTFPYQYPGAGFSSLMTGSVPNLKVTSSLKDDEASLQRELRNAECMASLASSGFHKREGLLYTPQHPSMCLSEGQDGSLGFSSSVLSPQYLKAAQELLDEIVNVRKALKQTGLDKQRSFRDIGLDGSKDSDGKSTSQSGQISSCPNSSAANSSCELSPAERQNLLDKKTKLLTMLDEVDKRYRQYCHQMQIVVSSFDMVAGCGAAEPYTALALSTISRHFRCLRDAISGQIQVTQRSLGEQEGIPRLRYVDQQLRQQKALQQLGVIRQAWRPQRGLPETSVSILRAWLFEHFLHPYPKDSEKIMLARQTGLTRNQVANWFINARVRLWKPMVEEIYKEEFGDSEMSSNILSSENTLKAPRDDVQSPDSKREESQDNIITVDESDIQHHGLKLDHDSELDRGIRGSDHGKNGLDPRIGRLQGDQRFNINNSNSSYYGEGCIIASAPATYDLSELGNIGVGGQVSLALELRNCDSEGFGGSNDDMHRRRKKTLASSSEADLIDYHFTDQEKQQNKFGNPHLLHEFVV 636
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g03158 636 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 90 468 - -
Vimu1g03158 636 MobiDBLite consensus disorder prediction 458 486 - -
Vimu1g03158 636 Coils Coil 202 222 - -
Vimu1g03158 636 MobiDBLite consensus disorder prediction 230 266 - -
Vimu1g03158 636 MobiDBLite consensus disorder prediction 508 524 - -
Vimu1g03158 636 Gene3D - 378 455 - -
Vimu1g03158 636 ProSiteProfiles 'Homeobox' domain profile. 378 441 IPR001356 GO:0003677
Vimu1g03158 636 MobiDBLite consensus disorder prediction 240 266 - -
Vimu1g03158 636 MobiDBLite consensus disorder prediction 508 528 - -
Vimu1g03158 636 MobiDBLite consensus disorder prediction 471 486 - -
Vimu1g03158 636 Pfam Homeobox KN domain 398 437 IPR008422 GO:0003677|GO:0006355
Vimu1g03158 636 CDD homeodomain 381 442 IPR001356 GO:0003677
Vimu1g03158 636 SMART HOX_1 381 445 IPR001356 GO:0003677
Vimu1g03158 636 SMART prehox3 190 340 IPR006563 -
Vimu1g03158 636 Pfam Associated with HOX 197 339 IPR006563 -
Vimu1g03158 636 SUPERFAMILY Homeodomain-like 382 447 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g03158 Vimu-Chr1 43787970 43790894 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Vimu1g03158 POX 1.1e-48 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu1g03158 1 43787970 43790894 Vimu1g03158 1 43787970 43790894 ECH