Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g03157 ATGAGTGGTGCTGCATTCCTCTACGGTGCGCTTATTCATCCATCATCACCTTTGATTCAACAACAACGCTATCATTATTTATCACCACCAATCCCAATTCGACCGCTATGCATCTCCCCTCTCACCACCGCAATTGTTTCCACCACCACCTCCGTTCTCCAACGCGATTCCGCAGCTGAACTCGCGTCCTCGTCACCGTCAATCGACTCAAACGACGCCGTTTCGCCGCAGAATGAAACGGTTGAGCTGGAGACAGAGCGCCATACCGACGAAACAGTTCCGCGGCCACTCTCGTCCGAATATAAAGGAACTAGACTTCGAAAGAAGAAAGACGACGACGTCGTTTCGGATAACCGCTTCAAGCTCCGCAACGGAAGAGAAGTTTTTGAGGAAAAAGCGTATCTCGTAGGCGTTGAGCGCAAGAACGATGTTCAGGATTTTGGAATCGAAGAGTCCCTGAGCGAATTGGCGCAGTTAGCTGACACTGCTGGATTATTGGTTGTTGGCTCTACTTACCAGAAGCTCACATCTCCAAACCCTAGGACATACATTGGCTCTGGCAAGGTTTCTGAAATTAAGAGCGCAATTCATGCACTGGGTGTTGAAACCGTTATCTTTGATGATGAACTGTCAGCTGGGCAATTGCGCAACTTGGAAAAGATTTTTGGTGGAGATGTTTCGTTAGCACAAATGGAATACCAACTACCTCGTCTAACAAAAATGTGGACTCATCTTGAACGCCAAGCAGGAGGAAAGGTGAAGGGAATGGGTGAAAAACAAATAGAAGTGGACAAACGTATTTTGCGTAATCAAATTGGTATTCTAAAAAAAGAGCTAGAATCTGTTAGGAAACATCGAAAGCAGTACCGTAACAGGCGTTTCTCAGTTCCTGTGCCAGTGGTATCTCTGGTTGGTTACACAAATGCTGGTAAGAGTACACTTTTGAATCAACTAACTGGAGCAGATGTTCTTGCTGAGGATAAATTATTTGCAACTTTAGATCCAACTACGAGAAGGGTCCAGATGAAGAATGGAAAGGAGTTTCTCTTAACAGACACTGTTGGTTTTATTCAGAAGTTACCTACGACTCTAGTTGCTGCCTTCAGAGCTACTCTGGAGGAGATATCGGAGTCATCACTGATGGTGCATGTGGTTGATATAAGTCATCCGCTGGCCGAGCAACAGATAAATGCAGTTGACAAAGTCTTGTCAGAACTAGATGTATTATCAATTCCAAAATTGATGGTCTGGAACAAGGTTGATAAAGTTAGTGATCCCCATAAACTCAGGCTAGAAGCTGAAAAAAGAGATGATGTTGTATGCATATCTGCTATAAGTGGTGATGGTTTACAAGAATTTTGTAATAAAGTTCAAGACAGGCTAAAGGACTCCATGGTTTGGGTGGAAGCTTTGGTCCCATTTGAAAATGGAGACCTTCTCAGTACCATACACCAGGAATATACTGAGCAAGGGACATATATCAAGGCACACGTGCCCCTGCGTTTTGCGAGAATGCTCACACCCATGAGGCAACTGTGCGTATCGCGACCTTAA 1554 0.4472 MSGAAFLYGALIHPSSPLIQQQRYHYLSPPIPIRPLCISPLTTAIVSTTTSVLQRDSAAELASSSPSIDSNDAVSPQNETVELETERHTDETVPRPLSSEYKGTRLRKKKDDDVVSDNRFKLRNGREVFEEKAYLVGVERKNDVQDFGIEESLSELAQLADTAGLLVVGSTYQKLTSPNPRTYIGSGKVSEIKSAIHALGVETVIFDDELSAGQLRNLEKIFGGDVSLAQMEYQLPRLTKMWTHLERQAGGKVKGMGEKQIEVDKRILRNQIGILKKELESVRKHRKQYRNRRFSVPVPVVSLVGYTNAGKSTLLNQLTGADVLAEDKLFATLDPTTRRVQMKNGKEFLLTDTVGFIQKLPTTLVAAFRATLEEISESSLMVHVVDISHPLAEQQINAVDKVLSELDVLSIPKLMVWNKVDKVSDPHKLRLEAEKRDDVVCISAISGDGLQEFCNKVQDRLKDSMVWVEALVPFENGDLLSTIHQEYTEQGTYIKAHVPLRFARMLTPMRQLCVSRP 517
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g03157 517 NCBIfam GTPase HflX 226 460 IPR016496 GO:0005525
Vimu1g03157 517 PRINTS GTP1/OBG GTP-binding protein family signature 368 386 IPR006073 GO:0005525
Vimu1g03157 517 PRINTS GTP1/OBG GTP-binding protein family signature 301 321 IPR006073 GO:0005525
Vimu1g03157 517 MobiDBLite consensus disorder prediction 57 80 - -
Vimu1g03157 517 CDD HflX 258 461 IPR030394 GO:0005525
Vimu1g03157 517 MobiDBLite consensus disorder prediction 81 109 - -
Vimu1g03157 517 PANTHER GTP-BINDING PROTEIN HFLX 226 498 IPR016496 GO:0005525
Vimu1g03157 517 FunFam GTPase HflX 298 467 - -
Vimu1g03157 517 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 299 471 IPR027417 -
Vimu1g03157 517 Pfam 50S ribosome-binding GTPase 301 419 IPR006073 GO:0005525
Vimu1g03157 517 Coils Coil 272 292 - -
Vimu1g03157 517 NCBIfam small GTP-binding protein domain 300 454 IPR005225 GO:0005525
Vimu1g03157 517 Pfam GTP-binding GTPase N-terminal 150 225 IPR025121 -
Vimu1g03157 517 Hamap GTPase HflX [hflX]. 153 490 IPR016496 GO:0005525
Vimu1g03157 517 MobiDBLite consensus disorder prediction 57 109 - -
Vimu1g03157 517 Pfam GTP-binding GTPase Middle Region 226 293 IPR032305 -
Vimu1g03157 517 Gene3D - 142 226 IPR042108 -
Vimu1g03157 517 Gene3D - 298 466 IPR027417 -
Vimu1g03157 517 ProSiteProfiles HflX-type guanine nucleotide-binding (G) domain profile. 299 465 IPR030394 GO:0005525
Vimu1g03157 517 Gene3D - 227 284 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g03157 Vimu-Chr1 43777511 43785484 Dispersed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu1g03157 1 43777511 43785484 Vimu1g03157 1 43777511 43785484 ECH