Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g03148 ATGGCCTCATCCACCGGAATCTCTACCACTTCACCCTCTCAGGACGATCTCCACCTTCTCATGGAACAAAGAAGAAAGAAGAGAAAGCAGTCCAACCGTGACTCCGCCAGAAGATCAAGGATGCGAAAGCAGAAGCACTTCGATGATCTCACTGCACAGCTCCAGAGTCTCCACAAGGAAAATGACCTTATCTTGAACCAAATCAACGTCACCACCCAACACTATCTCAAGCTCCACGCTCACAACTCCATCCTCATAGCCCAGAAGACTGAACTCGCTCAAACCCTTCACTCCTTCAATCACATCATCAAACTCATCAACGCAACAAACCATTATTATCATCACCATAACGATAACAAAACCAACAATAATTTCATCACTCCCATGCACACGTCCTTCCTTAATCACCCCATTGTCGCCACTGCAGACAACATGTGTCTGTGGTGA 447 0.4653 MASSTGISTTSPSQDDLHLLMEQRRKKRKQSNRDSARRSRMRKQKHFDDLTAQLQSLHKENDLILNQINVTTQHYLKLHAHNSILIAQKTELAQTLHSFNHIIKLINATNHYYHHHNDNKTNNNFITPMHTSFLNHPIVATADNMCLW 148
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g03148 148 SUPERFAMILY Leucine zipper domain 24 79 IPR046347 GO:0003700|GO:0006355
Vimu1g03148 148 MobiDBLite consensus disorder prediction 1 47 - -
Vimu1g03148 148 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 27 42 IPR004827 GO:0003700|GO:0006355
Vimu1g03148 148 SMART brlzneu 20 84 IPR004827 GO:0003700|GO:0006355
Vimu1g03148 148 MobiDBLite consensus disorder prediction 1 17 - -
Vimu1g03148 148 Pfam bZIP transcription factor 23 80 IPR004827 GO:0003700|GO:0006355
Vimu1g03148 148 CDD bZIP_plant_GBF1 25 75 IPR045314 GO:0003700|GO:0006355
Vimu1g03148 148 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 22 85 IPR004827 GO:0003700|GO:0006355
Vimu1g03148 148 FunFam BZIP transcription factor 22 73 - -
Vimu1g03148 148 PANTHER BZIP TRANSCRIPTION FACTOR 44 10 144 - -
Vimu1g03148 148 Gene3D - 22 77 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g03148 Vimu-Chr1 43749307 43750549 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Vimu1g03148 bZIP_1 1.8e-10 CL0018