Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vimu1g03145 | ATGGCCAATTCCCGCCAAGTTAGAGATAACAATAATGGTGGACTGACCTCAAAACAAGGCAAGGTGGCTAATAATGCAACAATGGTTTCTGTTCCACTGAATTGGTTTTATCTGTTGGGGCCTTCATTTTCATGTTTTCTTTCAACCACAAAAGATCTTTCGTATTCATCTAACAGTCTTCACATGTCAGGGCCGCTTGATCGGTTCGCACGTCCCTGCTTTGAGGGGTTTTCTGGTCATGATGAAAGGAGGGAGAGAAGATCGGATTTAGAGAATTCAGAGGATGATCGGCGAACGAGGATTGGCAGTTTGAAAAAGAAAGCAATCAATGCTTCAAGCAAGTTCAGGCATTCTCTTAGGAAGAAGAGCAGCAGAAGGAAGAGCGCGAGCCGAAGCAATTCGGTCTCCATTGAGGATGTTCGAGATGTTAAGGAACTTCAGGCAGTGGATGCTTTTCGACAGGCACTTATGTCGGAAAGCTTGTTGCCGTCAAGACATGATGACTACCATATGTTACTAAGATTCTTGAAAGCAAGGAAATTTGACGTTGAGAAAGCAAAGCACATGTGGGCCAACATGATCCAATGGAGGAAAGAGTATGGTACTGATACGATTATGGAGGATTTTGAATTCAGTGAGTTGAATGAAGTCCTGCAGTACTATCCACATGGTTATCATGGGGTGGATAAGGATGGAAGACCTGTTTATATTGAAAGGTTAGGCAAAGTTGATCCCTGTAAGCTTATGCAAGTGACTACCATAGAAAGGTATTTGAGATACCATGTGCAGGGTTTTGAGCAAACGTTTGCTGTTAAGTTTCCTGCATGCTCTATTGCTGCAAAGAGACATATAGATTCAAGTACAACCATTTTGGACGTTCATGGTGTGGGTTTTAAAAACCTAACCAAATCTGCTCGGGAACTCATCATGCGGCTGCAGAAAATTGATGGTGATTACTATCCCGAAGTTCTTGGAAACAAGTTCCAGAACAAATTACTTGAAATTATTGACGCGAGTGAGCTGCCAGAATTTCTAGGTGGTAGTTGCACTTGTATAGAGCAAGGTGGTTGTATGAGGTCTGATAAGGGTCCATGGCAGGACCCAAATATTTTAAAGATGGTTCTCAGTGGCGAGGTGCAATGTTCAAGGCAAATAGTAACGGTTTCTAATGATGAGGGCACCGTTATAGAATGTGACAAGGCATGCTTTCCAATGCCAATTCGAAGTAGTGATACATCAACAGCAGAATCAGGATCTGAAGTTGAAGATATCACTTCTCCCAAAGCCAGTGGAAATTATACAAACCCTAGATTAACTCCTGTTCATGAAGAAGCAAGACTGATTGGTAAGGCTAATCTCTCTGGCGGTTTCTCTGAGTATGATGAGTTTATTCCCATGGTTGACAAGGCCGTTGACCTCGGATGGAAGGAGAAACAAGTAACAACTCAAAACTCGAAAAGTTCAACAGAAAATTTCCTGCTGAGGACTGGAAAATCTGGTGGAAAGTGTGCACATATCTGGATTGTTATTGTGGGCTTCTTTGTTGGCATCTTTGCTCTTGCTCGTTCACTAGCATTTCATGTGACTAAGAGAATAAAGGACACTAAATTTGATTCTACCAAAAGTACACCTAACATGAGCATTGACTCAATAGCTAAGGAAGAATCTCGCCCCCCATCACCTGTTCCTAGATTAACAAAGACAGAACTTGTCTCATCTGCTTTGAAACGCCTTGGTGAGCTCGAGGAGAAGGTTGACATGCTACAGTCAAAACCAAATGTGATGCCATATGAGAAAGAGGAGCTGCTGAATGCTGCTGTTTATCGTGTGGATGCATTGGAAGCAGAACTGATTGCTACAAAGAAGGCTTTATACGAAGCTTTGATCAGACAAGAAGAACTTCTGGCATATATAGATCGTCAGGAAAGAAGTAAATTCGCGGTATGTAAACAAATTTGCATCTTTTATGAAAAAGAAGTTTTGCTGGTGAAGAGATAA | 1998 | 0.4189 | MANSRQVRDNNNGGLTSKQGKVANNATMVSVPLNWFYLLGPSFSCFLSTTKDLSYSSNSLHMSGPLDRFARPCFEGFSGHDERRERRSDLENSEDDRRTRIGSLKKKAINASSKFRHSLRKKSSRRKSASRSNSVSIEDVRDVKELQAVDAFRQALMSESLLPSRHDDYHMLLRFLKARKFDVEKAKHMWANMIQWRKEYGTDTIMEDFEFSELNEVLQYYPHGYHGVDKDGRPVYIERLGKVDPCKLMQVTTIERYLRYHVQGFEQTFAVKFPACSIAAKRHIDSSTTILDVHGVGFKNLTKSARELIMRLQKIDGDYYPEVLGNKFQNKLLEIIDASELPEFLGGSCTCIEQGGCMRSDKGPWQDPNILKMVLSGEVQCSRQIVTVSNDEGTVIECDKACFPMPIRSSDTSTAESGSEVEDITSPKASGNYTNPRLTPVHEEARLIGKANLSGGFSEYDEFIPMVDKAVDLGWKEKQVTTQNSKSSTENFLLRTGKSGGKCAHIWIVIVGFFVGIFALARSLAFHVTKRIKDTKFDSTKSTPNMSIDSIAKEESRPPSPVPRLTKTELVSSALKRLGELEEKVDMLQSKPNVMPYEKEELLNAAVYRVDALEAELIATKKALYEALIRQEELLAYIDRQERSKFAVCKQICIFYEKEVLLVKR | 665 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vimu1g03145 | 665 | SUPERFAMILY | CRAL/TRIO N-terminal domain | 144 | 209 | IPR036273 | - | |
| Vimu1g03145 | 665 | Gene3D | - | 326 | 377 | IPR036865 | - | |
| Vimu1g03145 | 665 | Gene3D | - | 201 | 325 | IPR036865 | - | |
| Vimu1g03145 | 665 | Gene3D | - | 121 | 200 | - | - | |
| Vimu1g03145 | 665 | MobiDBLite | consensus disorder prediction | 80 | 103 | - | - | |
| Vimu1g03145 | 665 | SUPERFAMILY | CRAL/TRIO domain | 213 | 373 | IPR036865 | - | |
| Vimu1g03145 | 665 | MobiDBLite | consensus disorder prediction | 409 | 436 | - | - | |
| Vimu1g03145 | 665 | SMART | sec14_4 | 213 | 350 | IPR001251 | - | |
| Vimu1g03145 | 665 | Pfam | CRAL/TRIO, N-terminal domain | 165 | 192 | IPR011074 | - | |
| Vimu1g03145 | 665 | SMART | CRAL_TRIO_N_2 | 168 | 193 | IPR011074 | - | |
| Vimu1g03145 | 665 | Pfam | CRAL/TRIO domain | 219 | 326 | IPR001251 | - | |
| Vimu1g03145 | 665 | MobiDBLite | consensus disorder prediction | 110 | 128 | - | - | |
| Vimu1g03145 | 665 | MobiDBLite | consensus disorder prediction | 80 | 134 | - | - | |
| Vimu1g03145 | 665 | CDD | SEC14 | 214 | 347 | IPR001251 | - | |
| Vimu1g03145 | 665 | ProSiteProfiles | CRAL-TRIO lipid binding domain profile. | 213 | 328 | IPR001251 | - | |
| Vimu1g03145 | 665 | PANTHER | CRAL-TRIO DOMAIN-CONTAINING PROTEIN YKL091C-RELATED | 85 | 324 | - | - | |
| Vimu1g03145 | 665 | Coils | Coil | 571 | 591 | - | - | |
| Vimu1g03145 | 665 | MobiDBLite | consensus disorder prediction | 537 | 563 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Vimu1g03145 | Vimu-Chr1 | 43722370 | 43727865 | Dispersed/Wgd |