Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g03130 ATGAATGCAACCATTGCAACTCCCGATGCAAGTCGTAATATCATAGCTAACAAGGGGTTTGGGATAAAAAGAACAACTTCAGGCTTCTGGGGTGAGAGTACGAAGGGAAGTCTTAACGTAAGATTTCCGAATACTCAACCATGCAGGAGTTTTAAGGTTGCAAGTTCTAGCCCTGGCATTACACGCGCTGTTTATTCTCCCGACCTCGACCAAGAGTCTCCGGCATTGGAGCGATCAGCTTTTCAGAGTCCAAAGGCAAACCCTGAAAATGTAGCTGCCATCATATTGGGTGGAGGTGCTGGAACTCGTCTCTTTCCTCTTACCCGCACAAGAGCCAAGTCCGCTGTTCCCATTGGAGGTTGTTACAGACTGATAGATATTCCTATGAGCAATTGCATCAACAGTGGCATCAGGAAAGTGTACGTTTTAACTCAGTTCAACTCTTGCTCCCTCAATGCCCACCTGTCTCGCACCTATAACTTTGGAAATGGAGTGAACTTTGGAGGTGGTTTTGTGGAGGTCTTGGCTGCTACTCAAACTCCTGGAGAATCTGGGAGCAAATGGTTCCAAGGAACAGCTGATGCAGTGAGACGATTTACCTGGGTTTTTGAGGACGCCAAGAACAAGAATATTGAAAACATAATGATAATTTCTGGTGACCATCTTTGCCGGATGGACTATATGCAGCTTGTGGAGAAACACAGTGAGAACAATGCTGATATCACAGTTTCATGTGTACCTATGGATGAAAGCGGTGCATCTGATCATGGGCTGATGAAAGTTGATAGAAGGGGAATGATTACAGAGTTTGTAGGTAATCCAAATGAAGTAGATGTAAACACAATGCGTGTTGATACCAGTCTCCTAGGCTTAAGTGAAGAAGAAGCAGAGAAATATCCTTTCCTTTCTCCAATGGGTGTTTTTGTATTCAGAACTGAGGTCCTGCTGAAACTGCTAAGGTGGAGCTGTCCTTCCTGCAATGACTTAGAATCTGAAATCATCCCATCTTCTTTGAGGGACCACAAAGTCCAAGCATATATGTTCAAGAATTACTGGAAAGATATTGGAACTATCAAGTCCTTCTTTGAAGCCAATCTGGCCCTAACAGAACAGTCTCCAAAATTTGAATTCTATGATCAGAAGAGGCCATTCTTCACTTCCCCAAGAAACAACCCACCCACTAGAGCAATAAAATGCAGGGTTGTGGATTCAATTATTTCTCATGGCTGTTACTTGAATGAGTGCAAAGTTCAACATTCTATTGTTGGTTTGCGCTCACGTTTAGAGGCTGGTTCAGAGCTTCAGGATACCATGATGATGGGTGCTGACTGCTATCAAACTGATTCTGAAATTGCCTCTCTGCTGGAAAAAGGGAAGGTTCCAATTGGTGTTGGAGAGAATACCAAAATCAGGAAGTGCATCATTGACAAGAATGCGAAGATAGGAAGAAATGTGATCATTGCCAATGCTGATGGTGTTGAAGAAGCTGACAGGCCTGAAGAGGGATTCTACATTAGGTCTGGCATTGTAGTTGTAGTGAAGAATGCAACTATCAAAGATGGAACAGTGATCTGA 1575 0.4343 MNATIATPDASRNIIANKGFGIKRTTSGFWGESTKGSLNVRFPNTQPCRSFKVASSSPGITRAVYSPDLDQESPALERSAFQSPKANPENVAAIILGGGAGTRLFPLTRTRAKSAVPIGGCYRLIDIPMSNCINSGIRKVYVLTQFNSCSLNAHLSRTYNFGNGVNFGGGFVEVLAATQTPGESGSKWFQGTADAVRRFTWVFEDAKNKNIENIMIISGDHLCRMDYMQLVEKHSENNADITVSCVPMDESGASDHGLMKVDRRGMITEFVGNPNEVDVNTMRVDTSLLGLSEEEAEKYPFLSPMGVFVFRTEVLLKLLRWSCPSCNDLESEIIPSSLRDHKVQAYMFKNYWKDIGTIKSFFEANLALTEQSPKFEFYDQKRPFFTSPRNNPPTRAIKCRVVDSIISHGCYLNECKVQHSIVGLRSRLEAGSELQDTMMMGADCYQTDSEIASLLEKGKVPIGVGENTKIRKCIIDKNAKIGRNVIIANADGVEEADRPEEGFYIRSGIVVVVKNATIKDGTVI 524
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g03130 524 PANTHER GLUCOSE-1-PHOSPHATE ADENYLYLTRANSFERASE-RELATED 55 524 IPR011831 GO:0005978|GO:0008878
Vimu1g03130 524 CDD LbH_G1P_AT_C 392 518 - -
Vimu1g03130 524 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 76 389 IPR029044 -
Vimu1g03130 524 Pfam Nucleotidyl transferase 93 370 IPR005835 GO:0009058
Vimu1g03130 524 SUPERFAMILY Trimeric LpxA-like enzymes 389 524 IPR011004 -
Vimu1g03130 524 SUPERFAMILY Nucleotide-diphospho-sugar transferases 90 485 IPR029044 -
Vimu1g03130 524 ProSitePatterns ADP-glucose pyrophosphorylase signature 2. 188 196 IPR005836 GO:0005978|GO:0008878
Vimu1g03130 524 NCBIfam glucose-1-phosphate adenylyltransferase 91 488 IPR011831 GO:0005978|GO:0008878
Vimu1g03130 524 FunFam Glucose-1-phosphate adenylyltransferase 390 524 - -
Vimu1g03130 524 CDD ADP_Glucose_PP 93 355 - -
Vimu1g03130 524 Gene3D Hexapeptide repeat proteins 391 524 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g03130 Vimu-Chr1 43619072 43622547 Dispersed/Tandem