Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g03121 ATGTTCCGTAATCAGTACGACACAGACGTGACGACATGGAGCCCGGCGGGGCGACTGTTCCAGGTGGAGTACGCGATGGAGGCGGTGAAGCAGGGCTCGGCGGCGATCGGTCTCCGATCCAAGACGCACGTGGTTCTCGCATGCGTCAACAAGGCCAACTCCGAACTCTCCTCGCACCAGAAGAAGATCTTCAAGGTCGACAACCACATCGGCGTCGCCATCGCCGGCCTCACTGCCGACGGCCGCGTCCTATCCCGATACATGCGATCCGAGTGCATCAACTATAACTACACCTACGAGTCTCCTCTCCCTGTAGGCAGACTTGTTGTTCAACTCGCCGACAAGGCACAGAACACTATCCCTCAAAGGTTGCTCTCTTCTTTGTCTATCCCCCCTCAAAGGTTAGATCCTTCCCTATGTATAGGTGTGTCTGCCTCTAGTCTTAATCGTCCCTCCCTCCCCCCCTCTCTCCTCTTAGGATGGTGGTATGTTGGCTGCACTGTTTGTGCCGCACGATTCAGAGGTTATGTGCCTCGCTTCTTGCAGCTAGTGGGAAGTTCAACAAACAGCGCCAATCTAGGAGTCCGACTAAGCTCAGGGTACTCTCGGTTTAACACCCGGAGCTCAGCCCCGAGAGGTTTTGAATCTAACCCACATAATGTCGGCAGCCGAGGTACCGAGGCTGGTTCCCATCTTAATGTTGATTCGCTCCACAGGGCAGTTTGCACGCAACGATCATGGAAACGTCCTTATGGGGTTGGCCTCCTGGTAGCTGGATTAGATGAATCAGGAGCTCACCTCTATTACAACTGTCCCAGTGGAAACTATTTTGAATATCAGGCTTTTGCTATTGGATCTCGCTCTCAAGCTGCAAAGACATATTTGGAACGCAGGTTTGATAACTTCATGGGCTCTTCTCGAGAAGATCTGATCAAAGATGCACTTATCGCAACTAGGGAGTCCTTGCAAGGTGAAAAACTGAGGAGTTCTGTATGCACTATTGCTGTGGTTGGAGTTGATGAACCATTCCACATTTTAGACCAAGAAACTGTTCAACAGCTGATTGATACTTTTGAGATTGTGAGGGAGGATGAACCTCCAGCTGAAGAAGCTCAGCCAGCAGCAGAGCAGGATGCTCCCACCGACCAGGCTTCTGGTGCAGATCAAGGTGCTGCTGGAGACCAAGGTGGTTCTCCAATGGAAATTTGA 1209 0.517 MFRNQYDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLACVNKANSELSSHQKKIFKVDNHIGVAIAGLTADGRVLSRYMRSECINYNYTYESPLPVGRLVVQLADKAQNTIPQRLLSSLSIPPQRLDPSLCIGVSASSLNRPSLPPSLLLGWWYVGCTVCAARFRGYVPRFLQLVGSSTNSANLGVRLSSGYSRFNTRSSAPRGFESNPHNVGSRGTEAGSHLNVDSLHRAVCTQRSWKRPYGVGLLVAGLDESGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFDNFMGSSREDLIKDALIATRESLQGEKLRSSVCTIAVVGVDEPFHILDQETVQQLIDTFEIVREDEPPAEEAQPAAEQDAPTDQASGADQGAAGDQGGSPMEI 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g03121 402 SUPERFAMILY N-terminal nucleophile aminohydrolases (Ntn hydrolases) 4 118 IPR029055 -
Vimu1g03121 402 MobiDBLite consensus disorder prediction 362 402 - -
Vimu1g03121 402 Pfam Proteasome subunit 240 337 IPR001353 GO:0005839|GO:0051603
Vimu1g03121 402 Pfam Proteasome subunit 29 120 IPR001353 GO:0005839|GO:0051603
Vimu1g03121 402 Pfam Proteasome subunit A N-terminal signature 6 28 IPR000426 GO:0006511|GO:0019773
Vimu1g03121 402 CDD proteasome_alpha_type_1 6 338 IPR035144 GO:0019773
Vimu1g03121 402 Gene3D Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 1 128 IPR029055 -
Vimu1g03121 402 SMART Proteasome_A_N_2 6 28 IPR000426 GO:0006511|GO:0019773
Vimu1g03121 402 ProSiteProfiles Proteasome alpha-type subunit profile. 21 355 IPR023332 -
Vimu1g03121 402 PANTHER PROTEASOME SUBUNIT ALPHA/BETA 10 119 - -
Vimu1g03121 402 ProSitePatterns Proteasome alpha-type subunits signature. 6 28 IPR000426 GO:0006511|GO:0019773
Vimu1g03121 402 SUPERFAMILY N-terminal nucleophile aminohydrolases (Ntn hydrolases) 239 357 IPR029055 -
Vimu1g03121 402 Gene3D Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 221 355 IPR029055 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g03121 Vimu-Chr1 43565170 43567811 Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu1g03121 1 43565170 43567811 Vimu1g03121 1 43565170 43567811 ECH