Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g03115 ATGAAAAGTGGTTTCCATTTAATGGAAGTTGTAGGCTTGGTAGCATTTACATTTTCTTTGAGGTGTGGCACTGCAAAGATCAAAAGTCTTGTCTGTGTGGCTACATTGGCTTTGGAGTCTGAGGCACAGTCTTGGAAGGATTCACCACATTCCTCACCACCCTTTGTGTCCTCCAACTTCTCTGCAAGATTTCCTCGCTTTCTAGGCCCTTGTCTCACGGCTTTGATTCTTGAAACACAACTTGTCTTTCAAGTTAAACCTCTCATCACTGCAGCAACACATATGTGTCTCACTCCATCATTGTTTGTAATTAGTATTGCTTCACGTTCACCACTTTTGTCATCAATAAATCCACTCACCTCATTCAAAGAGGTGTTAGTGTTGTTAAGCATAGTGCGTGAGCTCAAGGAGATTGGAGAGGGTATCAGCAACATGTATAGAAGAGGGGGAGAGGGAAAACATGTGCATCGCCATGGAAAATCTCACATTGCACCAGAATGTTCTCTACCACCATCCTCCTCCTCCTCCTCCTCCTCATCATCATCATCATCATCTTCTTCCTCTTCTTCATCACAGAGCCGGTGGGCTAACTTACCACCAGAGTTGCTTTTAGACATAATTCAAAGGTTGGAAGCCAGTGAAACCTCATGGCCTGCACGTAAAGCACTTGTGGCATGTTCCTCAGTTTGTAGGCTGTGGAGAGAGATAACAAAGGATGTGGTCAAGACACCAGAACAGTGTGGTTTGCTCACTTTTCCTATATCACTGAAGCAGCCTGGCCCAAGAGACTCACCAATCCAGTGTTTTATTAGGAGAGAAAGAGTGTCTGCAACATATTGTTTATATCTCGGCCTGAGCCCTGCACTTTCTGGTGATATGAGCAAACTGTTACTGGCAGCAAAGAAGATTCGAAGGGCAACATGTACAGAATTTTTAATATCATTGGTTGCTGATGATTTCTCTCGAACAAGCAACACTTACATTGGAAAGTTGAGGTCTAATTTTCTTGGCACCAAGTTCATGATCTTGGATGGCGAATCCCCACATGATTCTTCACTTCCATTGAACTGCAAGTTGCAGCAAAGAGTCCATCTGAAGCAGGTACTTCCCAAGGTTGCTGCTGCTGCTGCTAACTACAAAGTAGCCACAGTATCTTATGAACTCAATGTCCTCCGAACAAGAGGTCCAAGGCGAATGCGGTGTACGATGCACTTGATACCGATATCTGCAATCCAAGAAGGAGGAAGTGCTCCAACTCCTTTGAAGTTTACAAATTATCTTAATGAACATGTATCTACTACCACTACCACCACCACCTCAGACTCAAAAGGAAGGAAGCCAGAAGTTGTTGAGTTTGACACAAATGACACTGAAAATACTCAAGAATCAAGCCAGAGGGCAAGGGAACCATTGGTTTTGAAAAACAAGGCCCCTAGATGGCATGAACAACTACAATGCTGGTGCTTGAATTTCAAGGGAAGGGTTACAGTGGCCTCTGTGAAGAACTTCCAGCTCGTGGCAGCTGCTGAACCATGCCAAAATATTTCAGCTGCTGAACAAGAAAAAGTGATACTACAATTTGGAAAAATTGGGAAGGACATATTCACCATGGATTACCGATACCCCCTCTCAGCTTTTCAAGCCTTTGCAATATGTTTGAGCAGCTTTGACACAAAACCAGCTTGTGAATGA 1692 0.4374 MKSGFHLMEVVGLVAFTFSLRCGTAKIKSLVCVATLALESEAQSWKDSPHSSPPFVSSNFSARFPRFLGPCLTALILETQLVFQVKPLITAATHMCLTPSLFVISIASRSPLLSSINPLTSFKEVLVLLSIVRELKEIGEGISNMYRRGGEGKHVHRHGKSHIAPECSLPPSSSSSSSSSSSSSSSSSSSSQSRWANLPPELLLDIIQRLEASETSWPARKALVACSSVCRLWREITKDVVKTPEQCGLLTFPISLKQPGPRDSPIQCFIRRERVSATYCLYLGLSPALSGDMSKLLLAAKKIRRATCTEFLISLVADDFSRTSNTYIGKLRSNFLGTKFMILDGESPHDSSLPLNCKLQQRVHLKQVLPKVAAAAANYKVATVSYELNVLRTRGPRRMRCTMHLIPISAIQEGGSAPTPLKFTNYLNEHVSTTTTTTTSDSKGRKPEVVEFDTNDTENTQESSQRAREPLVLKNKAPRWHEQLQCWCLNFKGRVTVASVKNFQLVAAAEPCQNISAAEQEKVILQFGKIGKDIFTMDYRYPLSAFQAFAICLSSFDTKPACE 563
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g03115 563 CDD F-box_AtTLP-like 195 239 - -
Vimu1g03115 563 MobiDBLite consensus disorder prediction 167 194 - -
Vimu1g03115 563 Pfam F-box domain 195 242 IPR001810 GO:0005515
Vimu1g03115 563 MobiDBLite consensus disorder prediction 149 194 - -
Vimu1g03115 563 SUPERFAMILY F-box domain 183 239 IPR036047 GO:0005515
Vimu1g03115 563 SUPERFAMILY Tubby C-terminal domain-like 244 563 IPR025659 -
Vimu1g03115 563 Gene3D Tubby Protein; Chain A 253 563 IPR025659 -
Vimu1g03115 563 Pfam Tub family 256 558 IPR000007 -
Vimu1g03115 563 ProSitePatterns Tub family signature 2. 548 563 IPR018066 -
Vimu1g03115 563 PRINTS Tubby superfamily signature 473 490 IPR000007 -
Vimu1g03115 563 PRINTS Tubby superfamily signature 491 507 IPR000007 -
Vimu1g03115 563 PRINTS Tubby superfamily signature 541 563 IPR000007 -
Vimu1g03115 563 PRINTS Tubby superfamily signature 327 351 IPR000007 -
Vimu1g03115 563 PRINTS Tubby superfamily signature 311 327 IPR000007 -
Vimu1g03115 563 PRINTS Tubby superfamily signature 378 405 IPR000007 -
Vimu1g03115 563 PRINTS Tubby superfamily signature 520 539 IPR000007 -
Vimu1g03115 563 MobiDBLite consensus disorder prediction 432 469 - -
Vimu1g03115 563 ProSitePatterns Tub family signature 1. 491 504 IPR018066 -
Vimu1g03115 563 Gene3D - 188 241 - -
Vimu1g03115 563 PANTHER TUBBY-RELATED 159 561 - -
Vimu1g03115 563 MobiDBLite consensus disorder prediction 454 468 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g03115 Vimu-Chr1 43506240 43509278 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Vimu1g03115 Tub 1.5e-103 CL0395
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu1g03115 1 43506240 43509278 Vimu1g03115 1 43506240 43509278 ECH