Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g03113 ATGAGTTGGAGAACTATAGCTTCCACTTCAAGACACACGTTCAAGAGACTCAATGCCATCTTCCGATCCCATTCCGCCACCCTCCCTTCTCCGCAACACTCACGCGCCTCCTTTGCCGCCTTCCTCCACGCGCCGTTCACCACCACCACCCATCACTCCTCCCAACCCACCAACGCCCTCATCGACCCCAAAGTCCATGCGACGCAAAACGACGCCGTCGACGAAAATGAAGACGCAACGAACGAGTTTCTATCGCGATTTGTGTGGATAATGCGGAAGAAAGTGAAGGAAGCGTACCCGGAATCCGACAAGGCCACCGTGGATGGCATGCTCGTGGGGATCGTGGAGAGGGTTACGGCGGAGATGGAAAAGGGCAGGGGAGTTGAAACGGCATCGTTGGGTTCGGGGGATTTCAGCGAGGATTTGTGGGGAACGGTGTGGGAGGTGAGCAATATGGTGTTGGCGGATATGGACAAGGAGAGGAAGAAGGAGAAAATGAAGGGCTTCTTGCAGTGCGAGGAGGTTAAGGAAATGTGCAGATTTGCCGGTGAAGTTGGCATTCGCGGCGATTTGCTTAGGGAGCTTAGGTTCAAGTGGGCGCGTGAGAAGATGGAGGAACATGAGTTCTACGAGGGTTTGGAGAAAATGAGGAAGGAGGCACAGAATGAGGAGAAGGAAAGTGGTGCTGGTGAGGAGAGGAAGAAGGAGAATGTTGCTGTTGGACTTCCCAAGAGGAGAGGGAAGATAAGGTACAAGATTTATGGGCTTGATCTATCTGATCCCAAGTGGGCACAAGTGGCTGATAGAATCCATGAGGCAGAGCAGGTGTTTTGGCCGCAGGAGCCGAAGGCAATTACGGGGAAAGCCAAGATGGTTAGGTCGAAGATTCTGTCGTGGAAGGATGATGATGATGATGGTTTGCAAACCCTGTTGAATGAGTGGGCGGAACTTGTTCAACCTAGCAGGGTGGAATGGATAGATTTGCTTGACAACCTGAAAGAGCAGAATCGTAGTTTGTACTCGAAGGTGGCTGAAATGTTATTGGCTGAAGATTCTTTCCAAACAATTGTCTCTGACTACTCTAGGCTTATTGATATCTATGCTAAAGAGGACTGCTTTGATGATGTTGAGAGATTGCTGAAGAAGATGAGCGAAAATGGTATACAACTAGATGCTGCAACGGCCAGTGTGTTGGTCCACATGTACTGCAAGGTAGGCAATCATGACCGTGCAAATGAAGCATTTGAAACCTTGAAGGGACTGGGTTTCCAACCGGACATCCAAGTCTTCAAGTCAATGATCATGGCATACGTGAATAATGGCCAGCCTAATTTGGGCGAGAAATTGATGAGGGAGATGGATTCAGGAAATATTAAACCCACGGAGGAAATATACATGGCATTGCTCCGATCTTTTTCTCAACATGGTGATACTAAAGGAGCTGACCGAATTTCATTAGCTATGCAATTTGCAGGATTCCAGCAGAGTATGGAGGCATACATCCTACTTATTGAGGCTAATGCACACATTGGTGACCCTTATCAGGCAAAAAGCCATTTTGACTACATGATAAAACTTGGGCATAAGCCTGATGATCGGTGTGCTGCTAGCATGATAGCAGCTTATGAGAAGAAAAACTACTTGGACGATGCATTGCAGCTTCTTTTGCAGTTAGAGAGCGATGGGTTTGAGCCTGGGGTAGCCACTTATTCTGTTCTTGTGGACTGGTTGAGTAAGTTGCAGCTTGTTGATGAGGTTGAGCAGCTTTTAGGAAAAATAGCTTTGCTGGGGGAGGCTCCTCCTTTTAAGCTTCAAGTAAGTCTCTGTGATATGTATGCAAGGGTTAGAAATGAGAAGAAGGCCCTTCAAATTCTAGGTGTACTGGAATCTAGGAAGGATGAATTAGGAAAAGCTGATTTTGAGAGAATTATAAGTGGCCTTATTGATGGTGGGTTTCAGCAAGATGCGCAACGAATATGCGGGATCATGGAGGCACAGGGTTTCGATGCATCAAGGGTTAAGGTCAACCTTTTGAAGCCTGTCTCTAGAGGACCTCGTAGGAGGTGGTCATGA 2073 0.4776 MSWRTIASTSRHTFKRLNAIFRSHSATLPSPQHSRASFAAFLHAPFTTTTHHSSQPTNALIDPKVHATQNDAVDENEDATNEFLSRFVWIMRKKVKEAYPESDKATVDGMLVGIVERVTAEMEKGRGVETASLGSGDFSEDLWGTVWEVSNMVLADMDKERKKEKMKGFLQCEEVKEMCRFAGEVGIRGDLLRELRFKWAREKMEEHEFYEGLEKMRKEAQNEEKESGAGEERKKENVAVGLPKRRGKIRYKIYGLDLSDPKWAQVADRIHEAEQVFWPQEPKAITGKAKMVRSKILSWKDDDDDGLQTLLNEWAELVQPSRVEWIDLLDNLKEQNRSLYSKVAEMLLAEDSFQTIVSDYSRLIDIYAKEDCFDDVERLLKKMSENGIQLDAATASVLVHMYCKVGNHDRANEAFETLKGLGFQPDIQVFKSMIMAYVNNGQPNLGEKLMREMDSGNIKPTEEIYMALLRSFSQHGDTKGADRISLAMQFAGFQQSMEAYILLIEANAHIGDPYQAKSHFDYMIKLGHKPDDRCAASMIAAYEKKNYLDDALQLLLQLESDGFEPGVATYSVLVDWLSKLQLVDEVEQLLGKIALLGEAPPFKLQVSLCDMYARVRNEKKALQILGVLESRKDELGKADFERIISGLIDGGFQQDAQRICGIMEAQGFDASRVKVNLLKPVSRGPRRRWS 690
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g03113 690 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 391 425 IPR002885 -
Vimu1g03113 690 Gene3D Tetratricopeptide repeat domain 298 475 IPR011990 GO:0005515
Vimu1g03113 690 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 531 565 IPR002885 -
Vimu1g03113 690 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 426 460 IPR002885 -
Vimu1g03113 690 Pfam Pentacotripeptide-repeat region of PRORP 345 478 IPR033443 -
Vimu1g03113 690 PANTHER OS07G0661900 PROTEIN 90 674 - -
Vimu1g03113 690 NCBIfam pentatricopeptide repeat 360 392 IPR002885 -
Vimu1g03113 690 NCBIfam pentatricopeptide repeat 430 462 IPR002885 -
Vimu1g03113 690 Coils Coil 329 349 - -
Vimu1g03113 690 Pfam PPR repeat 537 563 IPR002885 -
Vimu1g03113 690 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 356 390 IPR002885 -
Vimu1g03113 690 Coils Coil 213 233 - -
Vimu1g03113 690 Gene3D Tetratricopeptide repeat domain 476 687 IPR011990 GO:0005515
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu1g03113 1 43499497 43501721 Vimu1g03113 1 43499497 43501721 ECH