Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g03108 ATGAGTTTGAGAGAGGAAAATGAAGAGGGAAGGGATCTGAAGAAGCCATTTCTTCACACGGGAAGTTGGTATCGTATGAGTGGGAGACAATCCAGTGTGTTTGGTTCCACACAGGCCATTCGTGATTCCTCCATCTCAGTCATTGCTTGTGTTCTAATCGTTGCTTTGGGTCCTCTTCAGTTTGGTTTCACTGCTGGTTATACCTCACCTACCCAAGCTGCTATAATCACTGATCTAGGCCTCTCGGTCTCCGAGTTTTCTTTGTTTGGTTCTTTGTCCAATGTCGGTGCCATGGTTGGAGCAATAGCTAGTGGTCAGATTGCGGAGTATATAGGGCGGAAAGGGGATTCTTCTTTTCTTTATATGGGAAGATTGTTGGAAGGGTTTGGAGTAGGGATAATATCTCACGCGGTGCCGGTGTATATAGCTGAGATATCACCGCCAAACTTGAGGGGTGGTTTGGTTGCAGTTCACCAGCTCTCTGTCACCCTTGGAATCATGGTGGCGTATCTGCTGGGGATTTTTGTTGAATGGAGAATCCTTGCAATTTTAGGAATTTTACCATGTACAATATTGATACCTGGCCTATTTTTCATTCCTGAATCTCCTAGATGGCTGGCAAAAATGGGAATGACAGAAGACTTTGAAACTTCCTTGCAAGTACTCCGAGGCTTTGATACTGATATTTCTGCTGAAGTGAATGAAATTAAGAGGGCTGTTGCTTCAAGCCACAGAAGAACAACAATTCGATTTGCAGATCTCAAACAAAGAAGATATTGGCTGCCTTTAATGATTGGCATTGGACTACTTATGTTGCAACAGCTTTCTGGAATTAATGGTGTTCTTTTTTATTCCAGTACCATCTTTCGAAGTGCTGGAATTAGTTCAAGTGATGCAGCTACATTAGGAGTTGGTGCTGTTCAGGTTCTTGCCACCAGTTTAACTTTGTGGTTGGCCGACAGATCTGGCCGTCGTCTTCTACTTATTGTCTCTGCATCTGGAATGACTTTTAGTCTCTTGCTTGTTGCAATCTCATTCTATGTAAAGAATATTGTATCAGAAACTTCTTCCTTGTATGGGATATTGAGCACCTTGTCAGTGGTTGGAGTTATGGCCATGGTTATTGCATTCTCTCTGGGATTGGGAGCTATGCCATGGATTATAATTTCTGAGATTCTTCCATTAAACATCAAAGGCTTAGCGGGGAGTGTTGCAACACTTGCCAACTGGTTATTTTCTTGGCTGGTTACACTAACAGCTAATATACTCTTGGATTGGAGTTCTGGAGGTACCTTCACCATATATGCATTAGTATGTGCCTTCACTGTAGGATTTGTTACCATTTGGGTCCCTGAGACCAAGGGAAGATCCATTGAAGAAATCCAAATGTCTTTCAGATGA 1401 0.4268 MSLREENEEGRDLKKPFLHTGSWYRMSGRQSSVFGSTQAIRDSSISVIACVLIVALGPLQFGFTAGYTSPTQAAIITDLGLSVSEFSLFGSLSNVGAMVGAIASGQIAEYIGRKGDSSFLYMGRLLEGFGVGIISHAVPVYIAEISPPNLRGGLVAVHQLSVTLGIMVAYLLGIFVEWRILAILGILPCTILIPGLFFIPESPRWLAKMGMTEDFETSLQVLRGFDTDISAEVNEIKRAVASSHRRTTIRFADLKQRRYWLPLMIGIGLLMLQQLSGINGVLFYSSTIFRSAGISSSDAATLGVGAVQVLATSLTLWLADRSGRRLLLIVSASGMTFSLLLVAISFYVKNIVSETSSLYGILSTLSVVGVMAMVIAFSLGLGAMPWIIISEILPLNIKGLAGSVATLANWLFSWLVTLTANILLDWSSGGTFTIYALVCAFTVGFVTIWVPETKGRSIEEIQMSFR 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g03108 466 FunFam facilitated trehalose transporter Tret1 115 466 - -
Vimu1g03108 466 ProSitePatterns Sugar transport proteins signature 2. 126 151 IPR005829 GO:0016020|GO:0022857|GO:0055085
Vimu1g03108 466 SUPERFAMILY MFS general substrate transporter 51 462 IPR036259 -
Vimu1g03108 466 Pfam Sugar (and other) transporter 119 464 IPR005828 GO:0016020|GO:0022857|GO:0055085
Vimu1g03108 466 NCBIfam sugar porter family MFS transporter 120 461 IPR003663 GO:0016020|GO:0022857|GO:0055085
Vimu1g03108 466 Gene3D MFS general substrate transporter like domains 40 466 IPR036259 -
Vimu1g03108 466 PRINTS Sugar transporter signature 390 402 IPR003663 GO:0016020|GO:0022857|GO:0055085
Vimu1g03108 466 PRINTS Sugar transporter signature 58 68 IPR003663 GO:0016020|GO:0022857|GO:0055085
Vimu1g03108 466 PRINTS Sugar transporter signature 273 283 IPR003663 GO:0016020|GO:0022857|GO:0055085
Vimu1g03108 466 PRINTS Sugar transporter signature 367 388 IPR003663 GO:0016020|GO:0022857|GO:0055085
Vimu1g03108 466 PANTHER - 40 462 - -
Vimu1g03108 466 CDD MFS_GLUT6_8_Class3_like 48 460 IPR044775 GO:0008643|GO:0051119
Vimu1g03108 466 ProSiteProfiles Major facilitator superfamily (MFS) profile. 1 454 IPR020846 GO:0022857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g03108 Vimu-Chr1 43477512 43484119 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu1g03108 1 43477512 43484119 Vimu1g03108 1 43477512 43484119 ECH