Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g03102 ATGTCGATATCAAATTCGCTATCCTCAGTTCCCGCGCGTCTCACACTCCTCGCTCTCTTCTCCGCCACCACCTTCTACTGTCTCTACAAATCTCGTCGTTTGAGATACCTCAAACTATCCTTAAACCCTACCCCTAAACCTAAACCTAAGATCATATTCCTATCAGAAACAGGAACCAGCAAAACCCTCGCTCTCCGCCTCCACCGTCTCCTCGCCTCTAACGGCGTCGCATTCGACGTCGTCGATTCGCGGCACTACGAGCCCGAGGATCTTCCCAAGGAGACGCTTATCATCCTCGTCGCCTCCACGTGGCAGGACGGCGCACCGCCAGCTGCCTCCCGCTTCTTCGCCACGTGGCTCGCCGAAGCCGCCGCCGATTTTCGCGCCGGCTCCCTTCTCCTCTCGAGCTGCCGTGTGGCCGTCTTTGGCGTCGGGAGCCGAGCCTACGGAGAATCCTTCAACGCCGTCGCGAAGGGCCTCGCGACGCACCTGAGGGAGCTAGGCGCCAAGGAGGTGGTTCCGCTTTGCGAGGGGGATGTTGACGGTGATGACCTGGACAAGGTTTTCGATCGGTGGTGTGAGAAGGTTCTGGCCGTTTTGAAAGGAGGTGGTGTTGCGGAATGCGATGATGGTGATGGTGGTGGTGCTCTGGATTATGGCGTCTATTCGAGTTCCGAAGAGGAGTCTGATGTGGAGAGTGAGATTGTTGATCTTGAGGACATTGCTGGTAAAGCTCCTTCACGGCGGAAGACATTGGCTAGTGGGGAAGAGAGTAATGGGAAATTGAGTGGCAGAAAGGAAATGGTGACTCCGGTGATTCGAGCAAATTTAGTGAAGCAGGGGTATAAAATCATTGGGTCGCATAGTGGTGTCAAGATTTGTAGATGGACAAAGGCGCAGCTTCGTGGTCGAGGTGGTTGCTATAAGCACTCGTTTTATGGAATCGAGAGTCACAGATGCATGGAGGCAACCCCTAGCTTGGCATGTGCAAATAAATGTGTTTTCTGCTGGAGGCATCACACAAATCCAGTAGGGAAAAGTTGGCAATGGGAGATGGATGATCCGGTAGAGATTGTAAATTCTGCAATACACCTCCACACAAATATGGTTAAACAAATGAAAGGAGTTCCTGGAGTCACCTTGGAGCGATTAAATGAAGGTCTCTCACCTCGTCATTGTGCATTATCTCTTGTTGGTGAACCTATAATGTATCCAGAGATAAATGCACTTGTGGATGAGCTGCACAAAAGGAGGATTTCCACTTTTCTAGTTACAAATGCACAATTTCCTGAGAAAATTAAATCGCTGAAACCTATTACCCAGTTATATGTCAGTGTAGATGCTGCAACAAAGGACTCTTTGAAGGCAATTGATAGACCACTATTTGGCGATTTCTGGGAGAGATTCATTGATTCCTTGACTGCTTTAAGGGAAAAACATCAGCGAACAGTATACCGCCTGACCCTGGTGAAAGGTTGGAATACTGAAGATGTTGATGCTTATTCTAAGCTCTTTAGTATAGGAGATCCTGACTTTGTTGAAATCAAGGGAGTTACGTATTGTGGCAAGTCCACTACATCAAAAATCACAATGGAAAATGTCCCTTGGCATACTGATGTGAAAGCTTTTTCAGAGGCCCTAGCTTTGAAAAGTCAAGGAGAGTATGAAGTTGCATGTGAGCATGCTCACTCGTGCTGTATCCTCTTAGCAAAAACCAACAAGTTCAAAATCGATGGCCGGTGGTATACATGGATAGACTATGAAAAATTTCATGATCTGGTGGCATCTGGAAAAACTTTTGACAGCAGAGATTACATGACTGTCACACCATCCTGGGCCATCTATGGATCGAAGGAAAGTGGATTTGATCCAGGGCAAGTGAGATATAGGAAAGAGAGACATCACAAGTCGAGCCACAATCAATCAGGTTAG 1932 0.4814 MSISNSLSSVPARLTLLALFSATTFYCLYKSRRLRYLKLSLNPTPKPKPKIIFLSETGTSKTLALRLHRLLASNGVAFDVVDSRHYEPEDLPKETLIILVASTWQDGAPPAASRFFATWLAEAAADFRAGSLLLSSCRVAVFGVGSRAYGESFNAVAKGLATHLRELGAKEVVPLCEGDVDGDDLDKVFDRWCEKVLAVLKGGGVAECDDGDGGGALDYGVYSSSEEESDVESEIVDLEDIAGKAPSRRKTLASGEESNGKLSGRKEMVTPVIRANLVKQGYKIIGSHSGVKICRWTKAQLRGRGGCYKHSFYGIESHRCMEATPSLACANKCVFCWRHHTNPVGKSWQWEMDDPVEIVNSAIHLHTNMVKQMKGVPGVTLERLNEGLSPRHCALSLVGEPIMYPEINALVDELHKRRISTFLVTNAQFPEKIKSLKPITQLYVSVDAATKDSLKAIDRPLFGDFWERFIDSLTALREKHQRTVYRLTLVKGWNTEDVDAYSKLFSIGDPDFVEIKGVTYCGKSTTSKITMENVPWHTDVKAFSEALALKSQGEYEVACEHAHSCCILLAKTNKFKIDGRWYTWIDYEKFHDLVASGKTFDSRDYMTVTPSWAIYGSKESGFDPGQVRYRKERHHKSSHNQSG 643
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g03102 643 Pfam Wyosine base formation 508 571 IPR013917 -
Vimu1g03102 643 CDD Radical_SAM 325 501 - -
Vimu1g03102 643 SFLD tRNA wybutosine-synthesizing 264 575 IPR034556 GO:0008033|GO:0051539
Vimu1g03102 643 MobiDBLite consensus disorder prediction 621 643 - -
Vimu1g03102 643 SFLD tRNA wybutosine-synthesizing 264 575 - -
Vimu1g03102 643 Gene3D Aldolase class I 254 583 IPR013785 -
Vimu1g03102 643 SUPERFAMILY Radical SAM enzymes 326 506 - -
Vimu1g03102 643 PANTHER S-ADENOSYL-L-METHIONINE-DEPENDENT TRNA 4-DEMETHYLWYOSINE SYNTHASE 44 638 IPR034556 GO:0008033|GO:0051539
Vimu1g03102 643 FunFam S-adenosyl-L-methionine-dependent tRNA 4-demethylwyosine synthase 256 585 - -
Vimu1g03102 643 Pfam Flavodoxin 51 192 IPR008254 GO:0010181
Vimu1g03102 643 Pfam Radical SAM superfamily 325 503 IPR007197 GO:0003824|GO:0051536
Vimu1g03102 643 Gene3D - 23 205 IPR029039 -
Vimu1g03102 643 SUPERFAMILY Flavoproteins 47 200 IPR029039 -
Vimu1g03102 643 ProSiteProfiles Radical SAM core domain profile. 313 556 IPR007197 GO:0003824|GO:0051536
Vimu1g03102 643 ProSiteProfiles Flavodoxin-like domain profile. 49 197 IPR008254 GO:0010181
Vimu1g03102 643 PRINTS Flavodoxin signature 50 63 IPR001094 GO:0010181
Vimu1g03102 643 PRINTS Flavodoxin signature 98 109 IPR001094 GO:0010181
Vimu1g03102 643 PRINTS Flavodoxin signature 161 180 IPR001094 GO:0010181
Vimu1g03102 643 PRINTS Flavodoxin signature 136 146 IPR001094 GO:0010181
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu1g03102 1 43428348 43432751 Vimu1g03102 1 43428348 43432751 ECH