Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g03074 ATGGAGTCCATGGTTCGGTGCTATAGTTCTTGCGCGTTATTTGGATTTCGTTGCAACCTTCGATTCGCCGTTGTTGTTTTCGAGTTTCTAAAGTTGGATATCTATTGTTATATCCTGCATCAGATTGTATTGATATTGGCATGGTTGGAAGTCTATAATGCAAAGCTCCCAGAACACCGATTTCATGGGGGAGGTTTGGAAGGGAGGAGTGAGAACATTGCCTCACACTCTTGCATACATGACGAGATACTTGAACAGAGAAAACGACCTGGTCGAAAGGTGTATTCCGTTACCCCACAGGTTTACAAGCCTGGTCTTTCGAAACACCTCCAGCTTAAAGGTAGAGCGTTGCTTGGTATATCAACATCATCAGAGCTTCTAGAGATTGAAAAGCAACCTATTAGGATATATCTAAATTATGATGCAGTTGGTCACTCCCCTGACAGGGATTGCCAAAAGATTGGTGATATTATCAAGCTTGGGGAGCCTCCCATAACTTCTCATTCTGGTTTGCCTTCCTGTAATCCTCTTGCTGATCCTCCTGTCTTTGGCGATTGTTGGTATAATTGCACTTCTGAAGATATCTCAGGAGAGGACAAAAAACATCGCCTTCGTAAGGCATTAGGTCAGACAGCTGACTGGTTTAGAAGGGTATTGTCTGTGGAGCCTGTGAAGGGGAACTTGCGATTAAGTGGATACTCTGCATGTGGTCAAGATGGAGGTGTGCAGCTCCCTCATGCATATGTTGAAGAGGGAGTTTCTGATGCCGACTTGGTTCTCTTGGTGACTACAAGACCTACTACCGGGAATACACTTGCTTGGGCTGTGGCATGTGAACGGGACCAATGGGGTCGTGCTATAGCTGGACATGTTAATGTTGCTCCACGTCATTTGACAGCTGAGGCAGAGACTTTGCTATCAGCTACTTTGATACATGAGGTTATGCATGTTCTTGGTTTTGATCCACATGCCTTTACTCATTTTAGAGATGAAAGGAAAAGACGCCTTGACAAGGTTACTGAACAAGTTATGGATGAAAAGATTGGGCGGATGGTAACACGAGTGGTTCTTCCACGTGTTGTCATGCATTCCCGGCATCATTATGCGGCATTTTCAGGAAATTTTACCGGCTTAGAGCTGGAAGATGGTGGAGGACGGTCTCACTGGGAAAAGAGGCTTCTGATGAATGAGATCATGACTGGTTCTGTGGATACAAGATCTGTAGTTTCAAAAATGACACTAGCTCTATTAGAAGACAGTGGATGGTACAAAGCCAATTATAGCATGGCAGACCAACTTGATTGGGGTCGGAACCAGGGTACCGAGTTTGTTACCTCCCCTTGCAATCTATGGAAAGGGGCCTATCGTTGCAACACAACACAATTCTCAGGATGTACGTATAACAGGGAGGCAGAGGGTTACTGCCCAATTCTAACCTACAGCGGAGATCTTCCTCAGTGGGCTCGGTATTTTCCTCAAGCTAATAAAGGTGGACAATCCTCATTGGCTGATTATTGCACTTATTTTGTTGCATACTCTGATGGATCATGTACAGACACTAGCAGTGCACGAGCACCTGATAGCATGCTAGGAGAAGTTCGAGGAAGTAACTCCAGGTGTATGGCATCATCCTTGGTGCGCACAGGATTTGTACGGGGTTCTCTGACCCAGGGAAATGGCTGTTATCAGCACAGGTGTATCAACAATTTTCTAGAGGTTGCTGTGGATAGTGTCTGGAAAGTGTGTCCTCAGGCTGGTGGACCCATTCAGTTCCCTGGCTTTAATGGTGAATTAATCTGCCCTGCATATCATGAGCTCTGTAACACGGATCCAGTGGTTGTGTCTGGGCAATGTCCCAGTGCATGTAATTTCAATGGAGATTGTGTTGATGGAAGTTGTCACTGCTTTCTTGGATTTCATGGTCATGATTGCAGTAGACGTTACTGTCCTAGCAATTGCACTGGCAAGGGGGTGTGCCTCACCAGTGGAATATGTGAATGTAAAACTGGCTATACTGGCATTGACTGTTCCACTGCTGTTTGTGATGAGCAGTGCAGTCTTCATGGTGGAGTTTGTGATAATGGAGTTTGTGAATTCCGTTGTTCTGACTATGCGGGATATACTTGCCAGAACAGCTCCAGGCTCCTATCCAGTCTTTCAATTTGCAGAAATGTGCTGGGAAATGATATTTCCGGACAACATTGTGCACCCAGTGAACCTAGCATACTTCAGCAGCTAGAGGAAGTGGTTGTGATGCCCAACTACCATAGATTATTCCCCGGTGGTGCTAGGAAACTATTTAATATATTTGGCAGTACGTACTGTGATGAGGCAGCCAAAAGGCTTGCCTGCTGGATCTCAATTCAAAAGTGTGAGAAGGATGGAGACAACAGGTTACGAGTATGTCATTCTGCATGTCAGGCTTATAATCTAGCATGTGGAGCTTCACTGGACTGCGGTGACCAAACCCTTTTCAGCAGCGAGGGGGAGGGGGAGGGTCAGTGCACTGGCTCTGGTGAGATGAAATTGTCATGGTTTAATCGACTAAGAAATAGTTTTTCTTTGAGAAATAGTTCCTCAAAAGTGATATCTATAATAAGATATAGGCAGCTTTAG 2616 0.4518 MESMVRCYSSCALFGFRCNLRFAVVVFEFLKLDIYCYILHQIVLILAWLEVYNAKLPEHRFHGGGLEGRSENIASHSCIHDEILEQRKRPGRKVYSVTPQVYKPGLSKHLQLKGRALLGISTSSELLEIEKQPIRIYLNYDAVGHSPDRDCQKIGDIIKLGEPPITSHSGLPSCNPLADPPVFGDCWYNCTSEDISGEDKKHRLRKALGQTADWFRRVLSVEPVKGNLRLSGYSACGQDGGVQLPHAYVEEGVSDADLVLLVTTRPTTGNTLAWAVACERDQWGRAIAGHVNVAPRHLTAEAETLLSATLIHEVMHVLGFDPHAFTHFRDERKRRLDKVTEQVMDEKIGRMVTRVVLPRVVMHSRHHYAAFSGNFTGLELEDGGGRSHWEKRLLMNEIMTGSVDTRSVVSKMTLALLEDSGWYKANYSMADQLDWGRNQGTEFVTSPCNLWKGAYRCNTTQFSGCTYNREAEGYCPILTYSGDLPQWARYFPQANKGGQSSLADYCTYFVAYSDGSCTDTSSARAPDSMLGEVRGSNSRCMASSLVRTGFVRGSLTQGNGCYQHRCINNFLEVAVDSVWKVCPQAGGPIQFPGFNGELICPAYHELCNTDPVVVSGQCPSACNFNGDCVDGSCHCFLGFHGHDCSRRYCPSNCTGKGVCLTSGICECKTGYTGIDCSTAVCDEQCSLHGGVCDNGVCEFRCSDYAGYTCQNSSRLLSSLSICRNVLGNDISGQHCAPSEPSILQQLEEVVVMPNYHRLFPGGARKLFNIFGSTYCDEAAKRLACWISIQKCEKDGDNRLRVCHSACQAYNLACGASLDCGDQTLFSSEGEGEGQCTGSGEMKLSWFNRLRNSFSLRNSSSKVISIIRYRQL 871
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g03074 871 FunFam leishmanolysin-like peptidase isoform X2 451 510 - -
Vimu1g03074 871 ProSitePatterns EGF-like domain signature 1. 665 676 IPR000742 -
Vimu1g03074 871 Gene3D Leishmanolysin domain 4 512 605 - -
Vimu1g03074 871 ProSitePatterns EGF-like domain signature 2. 665 676 IPR000742 -
Vimu1g03074 871 FunFam leishmanolysin-like peptidase isoform X2 328 448 - -
Vimu1g03074 871 Gene3D Leishmanolysin , domain 2 326 448 - -
Vimu1g03074 871 PANTHER LEISHMANOLYSIN-LIKE PEPTIDASE 71 829 IPR001577 GO:0004222|GO:0006508|GO:0007155|GO:0016020
Vimu1g03074 871 Pfam Leishmanolysin 188 609 IPR001577 GO:0004222|GO:0006508|GO:0007155|GO:0016020
Vimu1g03074 871 FunFam leishmanolysin-like isoform X2 512 607 - -
Vimu1g03074 871 Pfam EGF-like domain 649 676 IPR013111 -
Vimu1g03074 871 Gene3D Laminin 649 679 - -
Vimu1g03074 871 Gene3D Leishmanolysin domain 3 451 510 - -
Vimu1g03074 871 Gene3D - 128 317 - -
Vimu1g03074 871 Gene3D - 606 648 - -
Vimu1g03074 871 PRINTS Leishmanolysin (M8) metalloprotease family signature 411 440 IPR001577 GO:0004222|GO:0006508|GO:0007155|GO:0016020
Vimu1g03074 871 PRINTS Leishmanolysin (M8) metalloprotease family signature 381 409 IPR001577 GO:0004222|GO:0006508|GO:0007155|GO:0016020
Vimu1g03074 871 PRINTS Leishmanolysin (M8) metalloprotease family signature 262 291 IPR001577 GO:0004222|GO:0006508|GO:0007155|GO:0016020
Vimu1g03074 871 ProSiteProfiles EGF-like domain profile. 645 677 IPR000742 -
Vimu1g03074 871 FunFam Peptidase M8, leishmanolysin 128 317 - -
Vimu1g03074 871 SUPERFAMILY Metalloproteases ("zincins"), catalytic domain 132 611 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g03074 Vimu-Chr1 43147356 43154927 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu1g03074 1 43147356 43154927 Vimu1g03074 1 43147356 43154927 ECH