Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g03059 ATGTCAATGGACATTCCCTTGCTAGAGAACACTGAGAACCCTCACACTGCTGAGGAGAAGACACTGAAATTTGCTGTTAAGAGTTTTGCTTTTGAATCAAAGAAGCTATGGAGACTAGCAGGTCCCGCTATCATCACCTGTATATGTCAGTACTCGCTCGGTGCACTCACTCAAACTTTTGCAGGCCAAGTTGGTGATCTTGCTCTTGCAGCAGTTTCTGTAGAAAATTCTGTCATTGCAGGTCTTGCTTTTGGCGTCATGTTGGGAATGGGAAGTGCCTTGGAGACTCTGTGTGGGCAAGCTTACGGTGCAGGGCAGATCAGGATGTTGGGAGTGTACATGCAGAGATCATGGGTCATCTTGTTCATCAGTGCACTTATTATGTTACCTATTTATATTTGGTCACCCCCAATTTTAGTGTTGTTTGGACAAACATCTGAGATCTCACATGCTGCAGGAAAATTTGCTCTGTGGATGATACCCCAGTTATTTGCATATGCTATAAACTTTCCAATCCAAAAGTTTTTGCAGGCACAAGGGAAAGTGCTTGTCATGTTATGGGTATCAGTAGGTGTTTTGGTGTTGCACACAGTTTTTAGTTGGCTTCTTATACTGAAGTTGGGGTGGGGTCTGATTGGAGCAGCTATCACTCTTAACACATCATGGTGGTTGATTGTGATTGCACAATTGCTCTACATTGTCATCACAAAGTCGGATGGAGCATGGACTGGATTCACATGGCTAGCATTTGTGGACTTGTTTGGTTTTATGAAGCTTTCTCTGGCTTCAGCTGTTATGCTATGCTTGGAGATCTGGTATTTGATGATATTAGTGGTGATAACAGGGCGTTTGGAAAATCCTCTGATAGCTGTTGATGCCATATCTATCTGTATGAACCTAAATGGTTGGGATGCCATGATTGCAATTGGGTTCAATGCTGCTATAAGTGTGAGAGTATCAAATGAACTTGGTGCTGGTGATTTCAAGGCTGCAAAGTTTTCAGTGTGGGTGGTTTCAATCACATCAGTGGCCATAGGTTTTGTGGTAATGATCGTAGTGCTATCAACAAAGGATTTTTTTCCCTACTTGTTTACCACCAGCTCTGCAGTTGCCTATGAAACAACTAAGCTTGCTTCTTTGCTCGGTTTCACTGTGCTTCTAAACAGCCTTCAACCAGTCCTATCTGGTGTTGCTGTTGGAGCTGGTTGGCAATCTCTTGTAGCATACATCAACATTGGGTGCTACTATGTATTTGGATTACCAGCAGGAATAATCTTGGGATTTACACTTAATTTTGGAGTAATGGGTATTTGGTCAGGGTTGATTGCAGGCATAGTTTTGCAGACCATAATCCTTATAGTAATCACTTCAATAACCAATTGGAAAAAAGAGGCTGAAGAAGCAGAGGGTCGTGTGAGAAGATGGGGAGGAACAATTGCATATGATCAATGA 1452 0.4249 MSMDIPLLENTENPHTAEEKTLKFAVKSFAFESKKLWRLAGPAIITCICQYSLGALTQTFAGQVGDLALAAVSVENSVIAGLAFGVMLGMGSALETLCGQAYGAGQIRMLGVYMQRSWVILFISALIMLPIYIWSPPILVLFGQTSEISHAAGKFALWMIPQLFAYAINFPIQKFLQAQGKVLVMLWVSVGVLVLHTVFSWLLILKLGWGLIGAAITLNTSWWLIVIAQLLYIVITKSDGAWTGFTWLAFVDLFGFMKLSLASAVMLCLEIWYLMILVVITGRLENPLIAVDAISICMNLNGWDAMIAIGFNAAISVRVSNELGAGDFKAAKFSVWVVSITSVAIGFVVMIVVLSTKDFFPYLFTTSSAVAYETTKLASLLGFTVLLNSLQPVLSGVAVGAGWQSLVAYINIGCYYVFGLPAGIILGFTLNFGVMGIWSGLIAGIVLQTIILIVITSITNWKKEAEEAEGRVRRWGGTIAYDQ 483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g03059 483 PANTHER MULTIDRUG RESISTANCE PROTEIN 26 461 - -
Vimu1g03059 483 Pfam MatE 42 202 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Vimu1g03059 483 Pfam MatE 263 423 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Vimu1g03059 483 NCBIfam MATE family efflux transporter 42 438 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Vimu1g03059 483 CDD MATE_eukaryotic 32 467 IPR045069 GO:0042910|GO:1990961
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g03059 Vimu-Chr1 43030251 43035909 Proximal
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu1g03059 1 43030251 43035909 Vimu1g03059 1 43030251 43035909 ECH