Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g03054 ATGGCGAAATCGAGCGCCGATGACGGCGACCTCCGGCGAGCTTGCGAAGCCGCAATTGAGGATACCAAGCAGAAGATCGTGATGGCGCTTCGGGTCGCCAAGGGTCACGGCATCTTAGGAAAATCGTCCAAGCTCGGTCGCCAAATGGCCAAGCCTAGGGTTCTCGCTCTCTCCATTGTTGGTGATGACGTGGTATTTGCTGCAGCAAAATCGAAGGGTCAGAGGACATCGGCTTTTCTTCGCGTATTGAAGTATTCTACAGGAGGAGTTCTTGAACCTGCAAAGCTATACAAGCTGAAGCATCTGTCAAAAGTGGAAGTTGTAGCAAATGATCCCAGTGGATGTACATTTACTCTGGGATTTGATAACCTTAGAAGCCAGAGTGTGGCTCCTCCTCAATGGACCATGCGCAATATTGATGACAGGAATCGCCTTCTTCTTTGCATCTTGAACATATGCAAAGATGTTTTGGGTCGCCTTCCGAAGGTTGTCGGTATAGATGTTGTGGAGATGGCTCTTTGGGCTAAGGAAAATACACCCTCTGTTCCTGCTCAGAATAAAGTACGAGATGGTGGTCCTGTTGCATCATCTGTTGTGAGGGAGACAGAATTAAAAGTTAATGTTGAAAAGGAACTTGTCTCCCAGGCAGAGGAAGAGGACATGGAAGCTCTTTTGGGAACTTATGTGATGGGTATAGGTGAAGCAGAAGAATTTTCTGAAAGGTTGAAGAGGGAGCTCCAGGCTCTCGAAGCAGCAAATGTTATGCAAGGACTTGAAGCAGCAACCAGTGTTGTGGAAGATATGGATGAATGGTTAAGCATATTCAATGTAAAACTCCGGCACATGAGGGAGGATATTGCATCAGTTATCCAGATAGAAACCCGCAATAACAATCTGGAAATGCAATCAGTTAATAACAAATCTCTCATTGAAGAGCTTGATAAGCTTCTTGAGCGGTTGCGTGTCCCTTCTGAGTATGCTGCAAGTTTGACAGGAGGTTCATTTGATGAAGCTCGAATGCTTCAAAATGTTGAGGCATGTGAATGGTTGACTAGTGCCTTACGTGGCCTTGAAGCACCTAATCTAGACCCTAGTTATGCAAACATGAGAGCTGTTAAAGAAAAGCGAGCAGACCTTGAAAAATTAAAATCTACTTTTGTCAGGAGAGCATCTGAATTCTTGAGAAATTATTTTGCTAGCTTGGTGGACTTCATGATAAGTGATAAAAGCTACTTTTCCCAGCGAGGACAGTTAAAGAGGCCTGATCATGCTGACCTGCGGTACAAGTGCAGGACATATGCACGTCTTCTGCAACATTTGAAGAGTCTTGACAAGAATTGCTTGGGTCCGCTGAGAAAAGCTTATTGCAGTTCTCTAAACTTGCTTCTTCGTAGGGAGGCCCGTGAGTTTGCAAATGAGCTTCGTGCTAGTACTAAAGCATCTAGAAATCCAAATGTTTGGCTCGAAAGTTCTTCAGGTTCTGGTCAAAATGTAACTGCTACAGACACTTCCACAGTTTCTGATGCTTATGCGAAGATGCTTACAATTTTTATTCCACTTCTGGTGGATGAGAGTTCGTTTTTTGCACACTTCATGTGCTTTGAAGTCCCTACACTCGTTCCTCCTGGAGGTGTTGTTAATGGAAACAAAACTGGATATGATGATGATGATGATGATTTGGGAATTATGGACATTGATGAGAATGACAACAAATCTGGTAAAACTTCTGCGGAGCTTGAAGCTTTGAATAAATCACTTAAGGATTTACTTGATGGAATACAAGAAGACTTTTATGCTGTTGTGGATTGGGCATACAAGATTGATCCTCTACGCTGTATATCAATGCATGGAATAACAGAGCGCTATCTATCTGGTCAGAAAGCTGATGCAGCAGGATTTGTACGTGATTTACTTCGTGACCTGGAGTCTCGGATATCTATGCAGTTCAACCGCTTTGTTGATGAAGCTTGCCATCAAATTGAAAGAAATGAAAAGAATGTTCGCTCATCCGGTGTCCTCTCATATATTCCCAGATTTGCAACCCTTGCAACTCGGATGGAGCAGTACATCCAGGGTCAGTCTAGGGATTTGGTTGACCAAGCATATACAAAATTTGTTAGCATAATGTTTGCTACTTTAGAAAAAATTGCTCAAACAGAACCAAAGAATGCAGATACTTTTCTTTTTGAGAACTATGCTGCCTTTCAGAATAGTTTGTATGACCTCGCCAACATTGTGCCCACTTTGGCCAAATTTTATCATCAGGCCAGTGAAGCCTATGAACAAGCTTGTACACGTCATATTAGCATGATAATATACTATCAATTTGAACGCCTTTTCCAGTTTGCTCGAAGGATTGAGGACTTGATGTTCACTGTTCCACCTGAAGAGGTACCTTTGATACAGATTCCTTTTCAACTTGGACTGTCAAAAATGGATCTTCGGAAGATGTTAAAATCCAGTTTATCTGGGGTGGACAAGTCCATTGCTACGATGTATAAGAAACTGCATAAAAACTTGACTTCAGAGGAACTATTACCCTCTTTATGGGACAAATGCAAGAAGGAGTTTCTTGATAAGTACGAAAGTTTTGCCCAACTTGTGGCTAGGATTTACCCTACGGAGACAATCCCATCTGTTGCAGAGATGAGAGACCTTTTAGCTTCCATGTAG 2673 0.4269 MAKSSADDGDLRRACEAAIEDTKQKIVMALRVAKGHGILGKSSKLGRQMAKPRVLALSIVGDDVVFAAAKSKGQRTSAFLRVLKYSTGGVLEPAKLYKLKHLSKVEVVANDPSGCTFTLGFDNLRSQSVAPPQWTMRNIDDRNRLLLCILNICKDVLGRLPKVVGIDVVEMALWAKENTPSVPAQNKVRDGGPVASSVVRETELKVNVEKELVSQAEEEDMEALLGTYVMGIGEAEEFSERLKRELQALEAANVMQGLEAATSVVEDMDEWLSIFNVKLRHMREDIASVIQIETRNNNLEMQSVNNKSLIEELDKLLERLRVPSEYAASLTGGSFDEARMLQNVEACEWLTSALRGLEAPNLDPSYANMRAVKEKRADLEKLKSTFVRRASEFLRNYFASLVDFMISDKSYFSQRGQLKRPDHADLRYKCRTYARLLQHLKSLDKNCLGPLRKAYCSSLNLLLRREAREFANELRASTKASRNPNVWLESSSGSGQNVTATDTSTVSDAYAKMLTIFIPLLVDESSFFAHFMCFEVPTLVPPGGVVNGNKTGYDDDDDDLGIMDIDENDNKSGKTSAELEALNKSLKDLLDGIQEDFYAVVDWAYKIDPLRCISMHGITERYLSGQKADAAGFVRDLLRDLESRISMQFNRFVDEACHQIERNEKNVRSSGVLSYIPRFATLATRMEQYIQGQSRDLVDQAYTKFVSIMFATLEKIAQTEPKNADTFLFENYAAFQNSLYDLANIVPTLAKFYHQASEAYEQACTRHISMIIYYQFERLFQFARRIEDLMFTVPPEEVPLIQIPFQLGLSKMDLRKMLKSSLSGVDKSIATMYKKLHKNLTSEELLPSLWDKCKKEFLDKYESFAQLVARIYPTETIPSVAEMRDLLASM 890
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g03054 890 SMART Sec3_PIP2_bind_2 48 156 IPR028258 -
Vimu1g03054 890 Coils Coil 576 596 - -
Vimu1g03054 890 Coils Coil 232 252 - -
Vimu1g03054 890 PANTHER SEC3/SYNTAXIN-RELATED 67 883 - -
Vimu1g03054 890 Pfam Exocyst complex component SEC3 N-terminal PIP2 binding PH 65 154 IPR028258 -
Vimu1g03054 890 Coils Coil 299 319 - -
Vimu1g03054 890 Pfam Exocyst complex component Sec3 578 873 IPR019160 GO:0000145|GO:0006887
Vimu1g03054 890 Pfam Exocyst complex component Sec3 250 499 IPR019160 GO:0000145|GO:0006887
Vimu1g03054 890 Coils Coil 199 219 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g03054 Vimu-Chr1 42968766 42984939 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu1g03054 1 42968766 42984939 Vimu1g03054 1 42968766 42984939 ECH