Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g03052 ATGTTTGGTGAAAGCTTTCCCCGATCACAGTACATGCAATCGGAGCCCAGAATGTCCAACACGGAGGCTTTAACCGACGACGAGTACACAATGCGGACTAGCAGTTCAGCGTCGCCGATGAGTCCTTATTTCTACGACCAGGGTAGGCTCAGCGGCGAGGGTTCTCCCATGATGATGTCGCCGTGGAACCAGACCTCCGGTTCGCCGTTTCAGAAGGTGCAGTGGTTGCCGAGTGACGACGGCGGGAGCTTGCCTCAGAACGCTCTCGTAGGTTCTCTTGTCCGAGAGGAGGGACACATATACTCGCTGGCAGCTACCGGCGACCTCTTGTACACGGGGTCCGACAGCAAGAACATTCGCGTGTGGAAGAATCTGCAGGAGTACTCTGGGTTCAAATCCAACAGCGGATTGGTCAAAACCATAATTCTGTCGGGACAGAAAATCTTCACGGGGCACCAGGACGGCAAAATCCGCGTCTGGAAGGTGTCGCCGAAGAACCCGAGCGTTCACAAACGCGCCGGCACGTTGCCCACACTTAAAGACATCTTCAAGAGCTCCATTAAACCCAGCAACTACGTCGAGGTTCGGCGACACAAAACGGCGTTGTGGATAAAACATTCGGACGCCGTTTCGTGTTTGAGTCTCTCTGATAACAAGTTGTATCTATACTCTGCGTCGTGGGACAGAACGATCAAGGTGTGGAGGATAGCCGACTCCAAATGCCTCGAGTCCATCCACGCGCACGACGACGCCGTCAACGCGGTGGTGTGCGGCGAAGAAGGGATGGTGTTTTCGGGGTCGGCGGACGGCACGGTGAAGGTGTGGCGGAGGGAGCCGCGGGGGAAGGGGTTGAAGCACACTGCGGTGAAAACGCTGCTGAAGCAGGAGTGCGCGGTGACGGCGCTGGCGGTGGACGCGGATGCTTCGATGGTTTACTGCGGCGCCTCCGATGGGCTAGTGAACTTCTGGGAGGGCGAGAAGGGTTACGTGCACGGCGGCGTCCTGAAGGGCCACAAGCTCGCCGTGCTGTGCCTCACCGCCGCGGGGACGTTAGTGTTCAGCGGGTCCGCAGATAAGACCATATGCGTGTGGAGAAGAGAAGGTGTGATTCACACGTGCGTGTCTGTTCTCACGGGTCACGACGGTCCCGTGAAGTGCCTGGCCGTGGAGGAGGACCGCGAAGCCGCCGGCAGCAGAGACCGGCGCTGGGTTTTGTACAGTGGCAGTTTGGACAAATCGGTTAAGGTTTGGAGTGTATCGGAATCGATGAACAATTACCAGGCGCAGCATCAGCGCATGGTTTCTGATGCGGAGTCGCTGCCGTCCATCTCCGACAGTAGCCTCTCTTCGGGCTGGGCCAGTGGGAGAAACTGA 1374 0.5779 MFGESFPRSQYMQSEPRMSNTEALTDDEYTMRTSSSASPMSPYFYDQGRLSGEGSPMMMSPWNQTSGSPFQKVQWLPSDDGGSLPQNALVGSLVREEGHIYSLAATGDLLYTGSDSKNIRVWKNLQEYSGFKSNSGLVKTIILSGQKIFTGHQDGKIRVWKVSPKNPSVHKRAGTLPTLKDIFKSSIKPSNYVEVRRHKTALWIKHSDAVSCLSLSDNKLYLYSASWDRTIKVWRIADSKCLESIHAHDDAVNAVVCGEEGMVFSGSADGTVKVWRREPRGKGLKHTAVKTLLKQECAVTALAVDADASMVYCGASDGLVNFWEGEKGYVHGGVLKGHKLAVLCLTAAGTLVFSGSADKTICVWRREGVIHTCVSVLTGHDGPVKCLAVEEDREAAGSRDRRWVLYSGSLDKSVKVWSVSESMNNYQAQHQRMVSDAESLPSISDSSLSSGWASGRN 457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g03052 457 ProSiteProfiles Trp-Asp (WD) repeats profile. 377 427 IPR001680 GO:0005515
Vimu1g03052 457 MobiDBLite consensus disorder prediction 7 42 - -
Vimu1g03052 457 Gene3D - 287 455 IPR015943 GO:0005515
Vimu1g03052 457 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 203 236 - -
Vimu1g03052 457 Gene3D - 62 176 IPR015943 GO:0005515
Vimu1g03052 457 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 245 275 - -
Vimu1g03052 457 SUPERFAMILY WD40 repeat-like 91 425 IPR036322 GO:0005515
Vimu1g03052 457 ProSiteProfiles Trp-Asp (WD) repeats profile. 203 244 IPR001680 GO:0005515
Vimu1g03052 457 ProSiteProfiles Trp-Asp (WD) repeats profile. 335 364 IPR001680 GO:0005515
Vimu1g03052 457 SMART WD40_4 328 365 IPR001680 GO:0005515
Vimu1g03052 457 SMART WD40_4 238 276 IPR001680 GO:0005515
Vimu1g03052 457 SMART WD40_4 285 324 IPR001680 GO:0005515
Vimu1g03052 457 SMART WD40_4 124 161 IPR001680 GO:0005515
Vimu1g03052 457 SMART WD40_4 370 418 IPR001680 GO:0005515
Vimu1g03052 457 SMART WD40_4 86 123 IPR001680 GO:0005515
Vimu1g03052 457 SMART WD40_4 196 235 IPR001680 GO:0005515
Vimu1g03052 457 FunFam BnaA09g28200D protein 193 280 - -
Vimu1g03052 457 Gene3D - 193 286 IPR015943 GO:0005515
Vimu1g03052 457 PANTHER F-BOX AND WD40 DOMAIN PROTEIN 36 422 IPR045182 -
Vimu1g03052 457 Pfam WD domain, G-beta repeat 372 418 IPR001680 GO:0005515
Vimu1g03052 457 Pfam WD domain, G-beta repeat 97 123 IPR001680 GO:0005515
Vimu1g03052 457 Pfam WD domain, G-beta repeat 206 234 IPR001680 GO:0005515
Vimu1g03052 457 Pfam WD domain, G-beta repeat 240 275 IPR001680 GO:0005515
Vimu1g03052 457 Pfam WD domain, G-beta repeat 333 364 IPR001680 GO:0005515
Vimu1g03052 457 MobiDBLite consensus disorder prediction 1 43 - -
Vimu1g03052 457 ProSiteProfiles Trp-Asp (WD) repeats profile. 245 275 IPR001680 GO:0005515
Vimu1g03052 457 PRINTS G protein beta WD-40 repeat signature 222 236 IPR020472 -
Vimu1g03052 457 PRINTS G protein beta WD-40 repeat signature 405 419 IPR020472 -
Vimu1g03052 457 PRINTS G protein beta WD-40 repeat signature 263 277 IPR020472 -
Vimu1g03052 457 CDD WD40 97 418 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g03052 Vimu-Chr1 42943784 42945465 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g02110 10 31024221 31027567 Vimu1g03052 1 42943784 42945465 PCT