Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g03050 ATGCCAGTTGGAGACATGGGCTTCAAGTTAAGTCCGCAAAATAATGCAATGATCAAGGTCACTCAAATCACACACACATACACGCAACGCAATGCATACGTGAGGACCAGACGAGGCAACGCAGCACCCGATCCAAACCCAAACCTTCGCTCTTCCATCTTCCACACACCAATGCTAAGAGAGGAAACGGTGGGTTCCAGAAGTGCCAGGCACACCGCCGCCTCCGCCACCGTCTCCAACAAGGTTCTCGTCGCCGTCAAAGCGGAGAAGGTGATCTCCAACACCGCATTAGCCTGGGCTCTCACTCATGTCGTTCACTCCAGCGACTCCATCACGCTCCTCGCCGTTTACTCTGCTCAAAAAACCGGCAGAAGATTCTGGCATTTTTCGAGAATTGCTGGAGACTGTACGACCGGACCGGCGGCGAAGTTGCCGGAGCGAATTTCAGATATCTCCGAGTCTTGTGCGCAGATGGTGCTTCAGTTGCACAATCAAGTTGAGGTGGTCACGGGTACTCCCAGTGGCGCTGTGGCGGCCGAGGCTAGATGGAGCGGTTCCCATTGGGTCATACTGGACAAGAAATTAAAGCAAGAGGTAAATCATTGTATGGATGAACTCGACTGTAGCATTGTGGTGATGAATGGGTCACAGGCAAAAATCCTCAGACTTAACTTAGGGTGTTCCGACGAACTCCAAACTCCCTTTTTCTCGGCTACTTCTTCACCAGGCATAGAAATTGCAAAGCTAAAAGGCGGAAGATTGATGCATTCTACCCCAGTGGGTAGCCCTGAAGAAGCAGGTACTTCTGTTATAAGAAATATAGGAGTAAATTCAGGGTCAAGCTCGGACTCGATGACTTCTCCTTTCCTTGTCTATGAACAAAACCCTCTGTACGAGGGTCAGGGCCCAGGAAAAAACATACACAAAGCAATCAACGAACAGATAGATTTCAATGTCCAGCCACCATTATACTTTGACATTGAAAGAGATCGCCCTCCCCCGCTCTGGCCGCGTCCAACACCATCTGTGGGTAGTGAAAACAAGACTGTATTTTGGATTCCTCAAAACCACATTGTAGACGAGAAGTTTCCGAAAACTAAAAACAACATCCAAAGAACTAAATCTCCATCTTCGAAAACTTTACTTGAGAATTTTAAGCGATGTGATCAAGAGATGAGAAGAAACGAATACGGGTTTGACCAAGCTCAAAGTAGAAGATACGACACGGGCAACAGAGATAATTCCATACCTTTGGGCAGAACTACCTCAATACCTCCTCCCTTGTGCTCACAGTGTCAGAATAAAGCACCAGTATTTGGAAAGCCTCCAAAACGGTTTTCTTACAAAGAGCTAGAGGAAGCTACTGATATGTTCTCAGATGTGAATTTTTTGGCTGAAGGTGGATTCGGTGTGGTCCACAAGGGAATACTCAAAGATGGCCAGGTTGTTGCGGTGAAACAGTTAAAGTGTGGGGGTTCTCAAGCAGATCTTGACTTCTGCAGGGAAGTTCGGGTTTTGAGCTGTGCACAACACAGAAATGTTGTGCTGTTGATAGGGTTTTGTACAGAGAGCAATTTGAGGATATTAGTTTATGAGTACATATGCAACGGATCCTTAGACCTCTACTTATATGGAGATGAGAGTATGCCTCTGGATTGGAACTCACGCTTAAAGATTGCAATTGGAACTGCACGAGGCTTGCGCTACCTTCATGAAGACTGTAGAGTTGGTTGTATAGTGCACAGAGACCTTCGACCCAAAAATATCCTCTTAACCCATGACTTTGAACCTCTGGTGGCGGATTTTGGGCTTGCTAGATGGTACTCAGAATTGAATATAGATACAGAAGATCGAGTTCTAGGAACTTCAGGGTATCTTGCACCGGAGTATCTTGACGCTGGAAATCTTACATATAAAGTAGATGTATATGCATTTGGAATTGTATTATTAGAGTTAATAACAGGTAGAAGAATTAGCGAGTTGGAACAGTTCAATGGATTCTCGTATCTTCCCGAATGGATTCACGTTCACCCTCTACGCATGTTAGAGCCCAGTCATATCTTACAAAACGTTAGTTCTCCCAAACCATTGGAATTTAATCTTCAATTGCAAGCTATGGCTCGAGCTGCTTCTTTGTGTCTCCGTGTGGATCCTGATGCCAGACCCCCAATGTCAAAGATCCTGCGAGTGCTGGAAGGGGGTGATCCAGTTCGTCCTATGGGTTTAGACATCAACTCAATTGGTAACACAAGTGGCCATTTAAGCGGTTTGAAGTCGCTCAATCCACCAGAAGCTACAATAATTCATTCTCGTACACTATCACATTGA 2328 0.4575 MPVGDMGFKLSPQNNAMIKVTQITHTYTQRNAYVRTRRGNAAPDPNPNLRSSIFHTPMLREETVGSRSARHTAASATVSNKVLVAVKAEKVISNTALAWALTHVVHSSDSITLLAVYSAQKTGRRFWHFSRIAGDCTTGPAAKLPERISDISESCAQMVLQLHNQVEVVTGTPSGAVAAEARWSGSHWVILDKKLKQEVNHCMDELDCSIVVMNGSQAKILRLNLGCSDELQTPFFSATSSPGIEIAKLKGGRLMHSTPVGSPEEAGTSVIRNIGVNSGSSSDSMTSPFLVYEQNPLYEGQGPGKNIHKAINEQIDFNVQPPLYFDIERDRPPPLWPRPTPSVGSENKTVFWIPQNHIVDEKFPKTKNNIQRTKSPSSKTLLENFKRCDQEMRRNEYGFDQAQSRRYDTGNRDNSIPLGRTTSIPPPLCSQCQNKAPVFGKPPKRFSYKELEEATDMFSDVNFLAEGGFGVVHKGILKDGQVVAVKQLKCGGSQADLDFCREVRVLSCAQHRNVVLLIGFCTESNLRILVYEYICNGSLDLYLYGDESMPLDWNSRLKIAIGTARGLRYLHEDCRVGCIVHRDLRPKNILLTHDFEPLVADFGLARWYSELNIDTEDRVLGTSGYLAPEYLDAGNLTYKVDVYAFGIVLLELITGRRISELEQFNGFSYLPEWIHVHPLRMLEPSHILQNVSSPKPLEFNLQLQAMARAASLCLRVDPDARPPMSKILRVLEGGDPVRPMGLDINSIGNTSGHLSGLKSLNPPEATIIHSRTLSH 775
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g03050 775 Gene3D Transferase(Phosphotransferase) domain 1 534 736 - -
Vimu1g03050 775 FunFam Os07g0541700 protein 534 622 - -
Vimu1g03050 775 SMART tyrkin_6 458 731 IPR020635 GO:0004713|GO:0006468
Vimu1g03050 775 SUPERFAMILY Protein kinase-like (PK-like) 438 731 IPR011009 -
Vimu1g03050 775 Gene3D Phosphorylase Kinase; domain 1 427 533 - -
Vimu1g03050 775 PANTHER OS01G0750732 PROTEIN 211 733 - -
Vimu1g03050 775 Pfam Protein tyrosine and serine/threonine kinase 464 730 IPR001245 GO:0004672|GO:0006468
Vimu1g03050 775 ProSiteProfiles Protein kinase domain profile. 458 738 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu1g03050 775 ProSitePatterns Tyrosine protein kinases specific active-site signature. 579 591 IPR008266 GO:0004672|GO:0006468
Vimu1g03050 775 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 430 533 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g03050 Vimu-Chr1 42931210 42937447 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-2 Vimu1g03050 PK_Tyr_Ser-Thr 1.5e-42 CL0016