Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g03042 ATGGCCCTTACGGACCTATTCACCGGAGAGATAGCCTCCGATCTCTGGAAAATGCTCATCACAATTTCCCGAAAGGCCCTGCGCTGCAAGTCCAGCGCGGAGCAACTCATCACCTACGTGCGCGAGATTCTTCCCACCATCGAGGAAATCAAGTACTCCGGGGTGGAGCTTCCGGCGCCGAGGCAGTCTCAGCTGGACCGCCTGTCGGAGATTCTGCGCTCCGGCGTGGAGCTTTCGCACCAGGCGCTGTCCTCCAGCCGCTGGAACGTGTACCGGAACTTCCAGCTGGCGAAGAAGATGGAGAAGCTGGAGAAGCACGTGACGAGGTTCCTGCAGGTGCCCATGCAGGCGCACATACTGGCCGACGTGCATCACGCGCGGTTCGAGATGGCGGAGCGGTTCGACCGGGTGGAGGCGTCGAACCGGCGGATGGAGCGGTTTCTGGAGGAGATGAAGATCGGAGTGAACGGCGGTGGGTGGGTGGAGGAGGCTGTGAAGAGCATGCAGGAAGATGAGACGTGGGTGGAAGGTTGTAACGGGAATAACGGTTTCGGTGTTGGGTTGGATTTCGGGAAGAAGAAGGTTATGGAGATGGTTTTCTCTAATAATGATGCTGATTGGATTGTCGGGATTTGTGGGATTGGTGGCTCCGGGAAAACCACCCTTGCCAGAGAGCTCTGCAGAGACGACCAAGTCCGATGTTATTTCAAGGACAGGATTTTGTTTTTGACCGTGTCACAGTCTCCGAATGTGGAGCAGCTGAGAGCGAGGATCTGGGGACACATCATGGGCAACCAAGGCTTGAATGGAAATTACGTGGTTCCGCAATGGATGCCACAGTTTGAATGCAAAGGGGAAGCTCAAGTTCTTGTTGTTCTTGATGATGTGTGGTCGCTCTCCGTGCTGGAGCAGCTTGTGTGGAAAATCCCTGGCTGCAAATTCCTTGTGGTGTCTCGATTCAGATTCCCAACATTCTTCAGTGCAACTTATCACGTGGAATTGCTGGGTGAAGAGGATGCCCTCTCTTTGTTTTGCCACCATGCTTTTGGACAGAAGTATATTCCTTTGGGTGCTAATGTGAGTTTGGTGAAGCAGGTTGTGGCTGAGTGTGGAAAACTTCCACTGGCTCTGAAGGTGATTGGAGCTTCTTTGCGAGACCAGAACGAAATGTTTTGGCTGAGTGTTAAGAGCAATCTGTCTCAAGGTCACAGTATTGGTGAGTCCTATGAAATCAATCTGATTGATAGAATGGCAATTAGTACAAACTACTTGCCAGAAAAGATCAAGGAGTGCTTCTTGGACCTGTGCTCTTTCCCTGAGGATAGAAAGATCCCTCTCGAAATTCTAATCAATATGTGGGTTGAAATCCATGACATTCGTGAGGCGGAAGCATATGCCATTGCGGTTGAGCTTTCGAATAAGAACCTTCTAACCTTAGTGAAAGAAGCACGTGCCGGGGGCATGTATAGCAGCTCCTTTGACATTTCTGTGACTCAGCATGACACGCTGAGAGACCTTGCTCTTATATTGAGCAAGCGCGGGAGCATTCATGAACACAGAAGGTTGGTCATGGCCCAACGAGAAGAGAATGGACTACTCCCAAGAGAATGGTCAAGATACCAGGACCGACCCTTTGAAGCTCAGATTGTTTCAATCAACACAGGGGAAATGACAGAAATGGATTGGTTTGAGCTGGATTTTCCCAAGGCTGAAGTGTTGATCATCAATTTCACGTCCAGTGATTACTTTTTACCTCCCTTCATCAGTAAGATGCCAAATTTGAGGGCACTGATAATAGTAAACTACAGTACCTCATATGCTCGCCTTCACAATGTTTCAGTTCTTAGGAATTTGACCAACTTGAGGAGTCTCTGGCTAGAAAAGGTTTCCACCCCTCCGTTGTCAGGCACTGTCTTGAAAAGCTTGAGCAAACTATTCGTAGTCCTCTGCCAGATTAACAACGGTTTGGATGGGAAACAGTTCCCTAACCTCTCTGAGCTCACACTTGATCACTGTAATGATCTAACATACTTGCCCTCAAGCATTTGTGGAATAAAGTCACTCAGAAACATGAGCCTCACAGACTGCCACAATTTGTCTGAACTACCTGATGAATTTGGCAATCTAAAATCTCTAGAGATCCTCCGTTTATATGCTTGTCCTGATCTAGAAACACTTCCTCCTAGCATGTGTGACATGAAGAAATTGAAGTACATTGACATTTCTCAGTGTACTAACCTCACCTGCTTCCCTAAAGAGATTGGTAGATTAGTAAGTTTAGAGAAGATTGACATGAGGGAATGCCCCATGATTAGGTATTTACCAAAGTCTGCAGTGTCATTACACTCTCTGCAGCTTGTAATTTGTGATGAGGAGGTGTATGGTACATGGAGAGATGTTGCTGAGATGGCCAAGTCAAATGTTCATATTCAAGTACCAGAACAACACTTTGATCTTGACTGGCTTCAAGAATGA 2475 0.4796 MALTDLFTGEIASDLWKMLITISRKALRCKSSAEQLITYVREILPTIEEIKYSGVELPAPRQSQLDRLSEILRSGVELSHQALSSSRWNVYRNFQLAKKMEKLEKHVTRFLQVPMQAHILADVHHARFEMAERFDRVEASNRRMERFLEEMKIGVNGGGWVEEAVKSMQEDETWVEGCNGNNGFGVGLDFGKKKVMEMVFSNNDADWIVGICGIGGSGKTTLARELCRDDQVRCYFKDRILFLTVSQSPNVEQLRARIWGHIMGNQGLNGNYVVPQWMPQFECKGEAQVLVVLDDVWSLSVLEQLVWKIPGCKFLVVSRFRFPTFFSATYHVELLGEEDALSLFCHHAFGQKYIPLGANVSLVKQVVAECGKLPLALKVIGASLRDQNEMFWLSVKSNLSQGHSIGESYEINLIDRMAISTNYLPEKIKECFLDLCSFPEDRKIPLEILINMWVEIHDIREAEAYAIAVELSNKNLLTLVKEARAGGMYSSSFDISVTQHDTLRDLALILSKRGSIHEHRRLVMAQREENGLLPREWSRYQDRPFEAQIVSINTGEMTEMDWFELDFPKAEVLIINFTSSDYFLPPFISKMPNLRALIIVNYSTSYARLHNVSVLRNLTNLRSLWLEKVSTPPLSGTVLKSLSKLFVVLCQINNGLDGKQFPNLSELTLDHCNDLTYLPSSICGIKSLRNMSLTDCHNLSELPDEFGNLKSLEILRLYACPDLETLPPSMCDMKKLKYIDISQCTNLTCFPKEIGRLVSLEKIDMRECPMIRYLPKSAVSLHSLQLVICDEEVYGTWRDVAEMAKSNVHIQVPEQHFDLDWLQE 824
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g03042 824 Gene3D - 415 506 IPR036388 -
Vimu1g03042 824 PRINTS Disease resistance protein signature 731 747 - -
Vimu1g03042 824 PRINTS Disease resistance protein signature 283 297 - -
Vimu1g03042 824 PRINTS Disease resistance protein signature 370 384 - -
Vimu1g03042 824 PRINTS Disease resistance protein signature 208 223 - -
Vimu1g03042 824 Pfam NB-ARC domain 193 414 IPR002182 GO:0043531
Vimu1g03042 824 Gene3D - 179 322 IPR027417 -
Vimu1g03042 824 Gene3D Ribonuclease Inhibitor 541 808 IPR032675 -
Vimu1g03042 824 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 186 435 IPR027417 -
Vimu1g03042 824 PANTHER PLANT BROAD-SPECTRUM MILDEW RESISTANCE PROTEIN RPW8 3 822 IPR039203 GO:0050832
Vimu1g03042 824 Gene3D - 334 413 IPR042197 -
Vimu1g03042 824 ProSiteProfiles RPW8 domain profile. 1 149 IPR008808 -
Vimu1g03042 824 Pfam Arabidopsis broad-spectrum mildew resistance protein RPW8 9 133 IPR008808 -
Vimu1g03042 824 SUPERFAMILY RNI-like 568 786 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g03042 Vimu-Chr1 42828439 42831765 Wgd