Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g03041 ATGGCCCTCAATGACTTCTTCGCCGGAGAGATCGCGACGGAGCTTCTCAAAATGCTCATCAGTATCTCCCGGAAGTCGCTCCTCTGCCGCGCCAGTGCCGACCAGCTCATCACCTACATCCACGAGCTCCTCCCCACCATCGAGGAGATAAAGTACTCCGGCGTCGAGCTCCCCGCCCTCCGCCAGTCCCAGCTCCACCGTCTCTCGGAGCTTCTCCGTTCCGGCGTGGAGCTCTCCCACAAGGTCCTGGCCTCCAGCCGCTGGAACGTTTACCGCAACCTCCACCTCGCCAAGAAGATGGACAAGCTCGAGAAGACCGTTTCGAAGTTCCTCCTCGGCCCCATGCAGGCCCACATCATGGCCGACGTCCACCACACGCGCTTCGAGATGGCGGAGCGCTTCGACCGCGTTGACAACTCCGTCCGCCGCCTCGAGCAGTACTTCGGGAACATTAAGATTGGGGTCGGCGGCGGCGGCTGGGTTGAGGAAGCAGTTAGGAGCGTGGATGAGAATGTTGTTGACGGAAGCTCCGCCGTGGGGTTGGAATTCGGGAAGATTAAGGTAAGGGAGATGATTGTCGGGAGGGAGGATCTCTGGGTTGTCGGGATTTCTGGGATTGGCGGTTCCGGGAAGACCACTCTCGCTAGAGAGGTCTGCAAAGATGACCAAGTTAGACGTTATTTCAGGGAGAGGATTTTGTTCCTGACTGTCTCGCAGTCTCCAAATGTGGAGCAACTAAGAACAAAGATTTGGGGGTACATTATGGGAAATGAGAGATTGGATTCGAACTATGTGGTTCCACAGTGGGTGCCGCAGTTTGAGTGCAAAAGTGAAGCAGCTCGAACTCTGATTGTTTTGGATGATTTGTGGACATTCTCTGTGATGGAGCAGCTTGTGTGCAGAATACCTGGTTGCAAGTATCTTGTGGTGTCCAGAACTAAATTCCAAACGGTGTTGAATTATGAAGTGGAATTGCTGAGTGAAGAAGATGCCTTGTCTTTGTTCTGTCACCATGCTTTTGGACAGAAATCAATCCCTTTAGGTGCTAATGAGAATTTGGTTGTCACTGAGTGTGGAAGGCTTCCTTTGGCTCTTAAGGTGATTGGAGCTTCTTTGCGAGATCAACCTGAGATGTTTTGGTTAAGTGTTAAAAACAGGTTATCTCAAGGTCAAAGCATTGGAGAATCCCACGAAATCAATCTGATTGAAAGAATGGCAATCAGTATCAATTACCTTCCAGAAAAAGTCAAGGAATGCTTCTTGGACCTGTGTTCATTTCCTGAGGATAAAAAGATCCCTTTGGATGTACTCATCAACATGTGGGTGGAAATCCATGATATTCCTGAAACAGAAGCTTATGCCATTGTTGTTGAACTCTCCAACAAAAATCTTCTCACCTTAATGAAAGAACCTCGTGCCGGAGGCATGTATAGCAGTTGCTTTGAGATATCAGTTACTCAACATGATATACTGAGAAACCTAGCCATTAATCTGAGCAACCGTGATAGCATTAATGAACGCCGGCGATTAGTAATGCCAAAAAGAGAAAATGCAATTCCTAAAGAGTGGTTGAGATACAAGCACAAGCCATTTGAGGCTCAGATTGTTTCAATTCATACAGGTGAAATGAAAGATGTGGACTGGTGTAATATGGAATTTCCAAAGACAGAAGTTCTGATCATTAATTTCACATCCACTGAGTACTTCTTACCTCTCTTCATCAACAGAATGCCAAATTTGAGAGCACTGATAATAATAAACTACAGTGCAACATATGCTTGTCTTCACAACATTTCAGTTTTCAAGAACTTACCCAACTTGAGGAGCCTGTGGCTTGAAAAAGTTTCCACCCCAGAATTATCAGGCACTGTGTTGGAAAACTTGGGAAAACTATTTATTGTCCTCTGCAAGATTAACAACAGATTGGTTGAAAAAGAGGTAGATCTAGCCAAAGTCTTCCCAAACCTCTTTGACCTCACTCTTGATCATTGTGATGATCTAACTCAGTTGCCTTCAAGCATCTGTGGAATGAACTCACTTCAAAACTTGAGTCTCACCAACTGCCACAATCTGAATCAATTGCCTCTTGAACTGGGGAAGCTAAAATCTCTAGAAATTCTTCGTTTATATGCTTGTCCTGATCTGAAAACACTGCCTAATAGCATATGTGAGATGATGAGATTGAAGTATATTGACATTTCTCAATGTGTGAACCTGACATGCTTCCCTGAAGAGATTGGTAGACTGGTGAGCTTGGAGAAGATTGACATGAGGGAATGTTCCATGATCAGAAATGTACCAAAGTCTGCATTGTCATTGCAGTCTCTGCTACTTGTAATCTGTGACGAAGAGCTATCTGGGATTTGGAAAGAGGTTGAGAAGGCCAAGCCTAATGTGCTCATTCAAGTATCAGAGCAGCACTTTGACTTAGACTGGCTTAAAGAATGA 2448 0.4579 MALNDFFAGEIATELLKMLISISRKSLLCRASADQLITYIHELLPTIEEIKYSGVELPALRQSQLHRLSELLRSGVELSHKVLASSRWNVYRNLHLAKKMDKLEKTVSKFLLGPMQAHIMADVHHTRFEMAERFDRVDNSVRRLEQYFGNIKIGVGGGGWVEEAVRSVDENVVDGSSAVGLEFGKIKVREMIVGREDLWVVGISGIGGSGKTTLAREVCKDDQVRRYFRERILFLTVSQSPNVEQLRTKIWGYIMGNERLDSNYVVPQWVPQFECKSEAARTLIVLDDLWTFSVMEQLVCRIPGCKYLVVSRTKFQTVLNYEVELLSEEDALSLFCHHAFGQKSIPLGANENLVVTECGRLPLALKVIGASLRDQPEMFWLSVKNRLSQGQSIGESHEINLIERMAISINYLPEKVKECFLDLCSFPEDKKIPLDVLINMWVEIHDIPETEAYAIVVELSNKNLLTLMKEPRAGGMYSSCFEISVTQHDILRNLAINLSNRDSINERRRLVMPKRENAIPKEWLRYKHKPFEAQIVSIHTGEMKDVDWCNMEFPKTEVLIINFTSTEYFLPLFINRMPNLRALIIINYSATYACLHNISVFKNLPNLRSLWLEKVSTPELSGTVLENLGKLFIVLCKINNRLVEKEVDLAKVFPNLFDLTLDHCDDLTQLPSSICGMNSLQNLSLTNCHNLNQLPLELGKLKSLEILRLYACPDLKTLPNSICEMMRLKYIDISQCVNLTCFPEEIGRLVSLEKIDMRECSMIRNVPKSALSLQSLLLVICDEELSGIWKEVEKAKPNVLIQVSEQHFDLDWLKE 815
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g03041 815 Gene3D Ribonuclease Inhibitor 537 798 IPR032675 -
Vimu1g03041 815 Pfam Arabidopsis broad-spectrum mildew resistance protein RPW8 9 135 IPR008808 -
Vimu1g03041 815 ProSiteProfiles RPW8 domain profile. 1 149 IPR008808 -
Vimu1g03041 815 Gene3D - 175 321 IPR027417 -
Vimu1g03041 815 PRINTS Disease resistance protein signature 200 215 - -
Vimu1g03041 815 PRINTS Disease resistance protein signature 276 290 - -
Vimu1g03041 815 PRINTS Disease resistance protein signature 358 372 - -
Vimu1g03041 815 PRINTS Disease resistance protein signature 675 691 - -
Vimu1g03041 815 Gene3D - 408 494 IPR036388 -
Vimu1g03041 815 Gene3D - 326 407 IPR042197 -
Vimu1g03041 815 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 180 423 IPR027417 -
Vimu1g03041 815 SUPERFAMILY RNI-like 552 781 - -
Vimu1g03041 815 Pfam NB-ARC domain 196 400 IPR002182 GO:0043531
Vimu1g03041 815 PANTHER PLANT BROAD-SPECTRUM MILDEW RESISTANCE PROTEIN RPW8 3 813 IPR039203 GO:0050832
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g03041 Vimu-Chr1 42823104 42826465 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu1g03041 1 42823104 42826465 Vimu1g03041 1 42823104 42826465 ECH