Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g03038 ATGTTAAATACACAACCCTCTTTCACCAACAATCACCCCTCTCCGATGCCTCTTTCCAGAAAATCGCTTTCCACCGGAGCCTACCTCAACGATGCCGGACCCGATGACAGCACTCCGCCACGCCGGTTGACCAGGCAGAGGAAGCTCCGCCACCTCAGCGACCATGACATTGGCTTCTCCTTCTTCCACTCCGCTGACTCTTTTTCTGCCTCGCCGGAGCCCCGCTACGCTTCCGGACACCGCTCCCTCTCTGGTCTGCCGCAACCGCTGCCTCTCCCTGAAGCGCCGTTGACCCGTCGAGCCAAGTCAGTCAGCTCCGGTTCCGTACATCCTCCCCTCTCTGCTTCCTTAGAACATCCTAATTTTTCTTCTTCCGGGAAGGCGTTGCCTCATGATGCAGTGACACGTGCAAAACCTACACTCCATTTGGATTCTACTCCTGCAAATGCAAAATACAATCTGAGAGAGCATATTCCTGCAACAGGTTTCTTGACAGGCCATAGTTCATTGAAAAATCGAAGAGCAGCATCTCATGGTAATGACTCTGAAGTTAATCCCCACTTGAATTTGGGTGTTGCTGCCAAGCCCAAGAGTGCTCCAACAAGTGTGGTCACTAGTCCTGATACTAGTCCATATAGATCAAATAACATAGACTTCTTTGATTCTACCTTCAACTTCTCTTCAGAAGTTAATGACAAATTGAAAGTGTTATCGGCTAAAAGTGTACATAGTCCAGACCATTCCCCTATTCATTGCCCTTTAAGCCTAACTCGTTACTTCAATCCTAAAATTGAGGAGGGATCTCAGAACCATAAATTTTTGTCCAAGGTGTGCCCTGAAAATATCCATGTTGATGCACATCCCTTGCCTCTTCCTCCTAGAGCTTCATCTCCTGCACAATTATCTGTGCTGCATCAATCAAGTACCATCCATCACACTACCGAAAATATGCCTTCAGTCAAAGGTCAATGGCAGAAAGGAAAACTTATTGGACGAGGAACCTTTGGAAGTTTACTCATGTGCATTACTACTTTACCTAACAGGGAAAATGGAGCCTCGTGTGCAATGAAGGAGATCAATTTAATTCCTGATGATCCTACATCTGCTGAGTGCATGAAACAACTGGACCAGGTTGGCAATCATTTGTACATATATATGGAATATGTCCATCCAGGATCAATCAGTAAATTTATGCGTGAGCACTGTGGAGCTATGACAGAATCTGTAGTTCGCAATTTTACAAGGCATATTCTCTCTGGTTTAGCTTACTTACACAGTAACAAAACCATCCACAGAGACATCAAAGGTGCAAACTTGCTGGTCAATGGATCCGGTATTGTGAAACTTGCAGATTTTGGGCTAGCGAAAATTCTGATGGGGAATTCATATGATCTTTCTCTAAAGGGTAGTCCTTACTGGATGGCTCCAGAGGTCGTGAAAGGTTCCATAAAAAACGAATCTAATCTTGATGTTGTCACGGGAATTGACATATGGAGCTTAGGGTGCACCATTATAGAGATGTTAACAGGCAAACCTCCTTGGAGTGAAGCTGAAGGGGCTTCAGCCATGTTCAAGGCACTGCAAGAGTCCCCTCCCATACCTGAAACATTATCATCAGTGGGAAAGGATTTCCTCCAAAAATGTTTCCAAAGGGACCCTGCAGATCGACCATCTTCATCAACTCTTCTTAAGCATGCCTTTGTGCAGAATTTGCATGATCAAGATGTTCTAGGTCATCCACAATCCTTTCCTAGAGGAGACCTTGGACCAGGAGGTAATTCAGCTAGTCCTAGAGACACCAGCACCACCAGAAGTGGCATAATTCAAGCCTCCATTAGCTCACGGTGTTTTAACAAGATTCAGAAACTAGTGGGTGATACTTCCGAACAAATCAATGACCACAAGGAGTCTAATCATATTATACCTTTTAGTCACTCTCATGTTCCAGAAGTGAACATTCTTCAATCTACATTGAAACCTGGTACCCTCAATTACATGTCTGCTGAAAATTCCAGAAACATTTCCACCATGATGAGAATGATCACAAATTTCTGA 2055 0.4467 MLNTQPSFTNNHPSPMPLSRKSLSTGAYLNDAGPDDSTPPRRLTRQRKLRHLSDHDIGFSFFHSADSFSASPEPRYASGHRSLSGLPQPLPLPEAPLTRRAKSVSSGSVHPPLSASLEHPNFSSSGKALPHDAVTRAKPTLHLDSTPANAKYNLREHIPATGFLTGHSSLKNRRAASHGNDSEVNPHLNLGVAAKPKSAPTSVVTSPDTSPYRSNNIDFFDSTFNFSSEVNDKLKVLSAKSVHSPDHSPIHCPLSLTRYFNPKIEEGSQNHKFLSKVCPENIHVDAHPLPLPPRASSPAQLSVLHQSSTIHHTTENMPSVKGQWQKGKLIGRGTFGSLLMCITTLPNRENGASCAMKEINLIPDDPTSAECMKQLDQVGNHLYIYMEYVHPGSISKFMREHCGAMTESVVRNFTRHILSGLAYLHSNKTIHRDIKGANLLVNGSGIVKLADFGLAKILMGNSYDLSLKGSPYWMAPEVVKGSIKNESNLDVVTGIDIWSLGCTIIEMLTGKPPWSEAEGASAMFKALQESPPIPETLSSVGKDFLQKCFQRDPADRPSSSTLLKHAFVQNLHDQDVLGHPQSFPRGDLGPGGNSASPRDTSTTRSGIIQASISSRCFNKIQKLVGDTSEQINDHKESNHIIPFSHSHVPEVNILQSTLKPGTLNYMSAENSRNISTMMRMITNF 684
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g03038 684 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 125 581 - -
Vimu1g03038 684 Pfam Protein kinase domain 379 567 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu1g03038 684 SMART serkin_6 324 568 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu1g03038 684 MobiDBLite consensus disorder prediction 1 26 - -
Vimu1g03038 684 MobiDBLite consensus disorder prediction 101 123 - -
Vimu1g03038 684 MobiDBLite consensus disorder prediction 576 604 - -
Vimu1g03038 684 MobiDBLite consensus disorder prediction 70 129 - -
Vimu1g03038 684 SUPERFAMILY Protein kinase-like (PK-like) 315 583 IPR011009 -
Vimu1g03038 684 MobiDBLite consensus disorder prediction 1 42 - -
Vimu1g03038 684 Gene3D Transferase(Phosphotransferase) domain 1 314 591 - -
Vimu1g03038 684 ProSitePatterns Protein kinases ATP-binding region signature. 330 357 IPR017441 GO:0005524
Vimu1g03038 684 ProSiteProfiles Protein kinase domain profile. 324 568 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g03038 Vimu-Chr1 42798420 42803404 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g03038 284 570 MAP Kinase Kinase Kinase AT5G66850 58.117 1.10e-122 379
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Vimu1g03038 Pkinase 1.4e-47 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu1g03038 1 42798420 42803404 Vimu1g03038 1 42798420 42803404 ECH
Vimu1g03038 1 42798420 42803404 Vimu10g03341 10 43525132 43529083 PCT