Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g03037 ATGAGAAGATTCAAACAATGTTCTTCTTCATTCTCTTCTCATTATTCTGCTTCTGAATCCAATCCTAGTAATAATCAAAACAGCAACAATGGTGTTAGAGTAAGAGGGACGTGGAGTGCAGAAGAAGATAGGGTTCTCACTGGGCTTGTGGAGGCCCATGGGCCGAAAAACTGGGCCTTGATAAGCCTACACGTAAAGGGCCGGTCTGGGAAGTCGTGCAGGCTTCGGTGGTGCAACCAGCTGAGTCCAACGGTGGAGCACCGACCGTTCACCACGCGTGAGGACGCGATTATCTTGCACGCGCACGACCGGTTAGGGAACAAGTGGGCAGCCATTGCGAGAATGCTTCCGGGCAGGACCGATAACGCCGTTAAGAACCACTGGAACGCCACGCTCAAGCGCAGGGTCTCCCAACGACGTCGTTTTGGGGATGACCCATTGACTGCGCTGACTCTGGCGCCGCCGGGAAGCGGCGGCGGAGGTTGGACGGCGGGGTTTCGCGATGTGGTTGCGAGGGAAGTCAGAGAATATGTGTCTTTCTCGTTTTCCGACGACTTGGGCGCTAACGAGAAATTATCCAATTACTAA 588 0.5374 MRRFKQCSSSFSSHYSASESNPSNNQNSNNGVRVRGTWSAEEDRVLTGLVEAHGPKNWALISLHVKGRSGKSCRLRWCNQLSPTVEHRPFTTREDAIILHAHDRLGNKWAAIARMLPGRTDNAVKNHWNATLKRRVSQRRRFGDDPLTALTLAPPGSGGGGWTAGFRDVVAREVREYVSFSFSDDLGANEKLSNY 195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g03037 195 Gene3D - 34 86 - -
Vimu1g03037 195 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 33 85 IPR017930 -
Vimu1g03037 195 ProSiteProfiles Myb-like domain profile. 82 132 IPR001005 -
Vimu1g03037 195 Pfam Myb-like DNA-binding domain 89 129 IPR001005 -
Vimu1g03037 195 Pfam Myb-like DNA-binding domain 35 81 IPR001005 -
Vimu1g03037 195 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 87 136 IPR017930 -
Vimu1g03037 195 MobiDBLite consensus disorder prediction 1 32 - -
Vimu1g03037 195 Gene3D - 88 145 - -
Vimu1g03037 195 FunFam MYB transcription factor 35 86 - -
Vimu1g03037 195 ProSiteProfiles Myb-like domain profile. 35 81 IPR001005 -
Vimu1g03037 195 CDD SANT 37 79 IPR001005 -
Vimu1g03037 195 PANTHER MYB PROTEIN-RELATED 35 141 - -
Vimu1g03037 195 SUPERFAMILY Homeodomain-like 34 128 IPR009057 -
Vimu1g03037 195 SMART sant 86 134 IPR001005 -
Vimu1g03037 195 SMART sant 34 83 IPR001005 -
Vimu1g03037 195 CDD SANT 89 132 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g03037 Vimu-Chr1 42793296 42795051 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vimu1g03037 Myb_DNA-binding 3.5e-14 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu1g03037 1 42793296 42795051 Vimu1g03037 1 42793296 42795051 ECH
Vimu1g03037 1 42793296 42795051 Vimu10g03338 10 43509992 43510654 PCT