Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g03034 ATGATGCAGGGAAGCTCGAGAAATGCAAATAAAACTGGGAAAACCTCAAGCAGAGAAAGAAAATTGGCTTTGAAACAAGATGTGGATAGGTTGAAGAAGAAGCTTAGGCATGAAGAGAATATTCATAGAGCATTGGAGAGGGCTTTCAATAGGCCATTGGGAGCTTTACCTCGTCTTCCTCCATATCTTCCTCCATACATACTAGCTCTTCTGGCTGAAGTGGCGGTTCTGGAAGAGGAAATTGTTAGGCTTGAAGAGAAGATTGTGCATTTCAGGCAGGATTTGTATCAGGAAGCTGTTTACATGTCATATTCTATGAGGAAACTTGAACATTCAGTTTCAGCTCCTCCAAACAAGTCAAACTCAACAACGGACAGTCCCAAGTTGGAAAAATTGAAGTTTCAATCCCAAACAGTTGGTAATTCTGCAGCATCATCTGCAACTAAGCCTACCACAACTCTCACAGAGGATAAGGAGAATCAATCCTGTAGTAATTCTTCCAAGAGCAGGAATCAATCATCCAACCATATGAACAAATATCCAATTAGAAAACTTCACAATAAATCCCCACAGAAAAGATTGGATCATCCAAAAATAAAGCAAGAACCAAGGTTGAACAGCCAGCAAATTGGAGATTTGAGAAACCATAGTACACATAAAAGTTCACCAGAAGCCGAGAGACCAAATATAATTTCAGAAAATATTGTGAAGTGCTTATCAAGCATTCTCTTGAGAATGAGTGCTGTGAAGAATCCAAGTTCTGCATGTGACATTCCACACCTGTGTGATCTAAGACCTAAAAACTGTGACGAAGGAACAGAGTTTGTGGATCCGTATGGCATCTGTTTGGAATTTGGGAAGAGGGATATCGGTCCATACAAGCAATTATGTGAAATTGATGCTAAATCTTTCAATCCAAAACGAACTGCAAATACTTTGTTTTTACAGCATCGTTTGAAGAAACTAGAATCTGTCAACCTAGAAAACCTCAACCATCAGGAGAAGCTCGCATTCTGGATAAACATCTACAACTCCTGTATGATGAATGCATTTATAGAAAATGGCATACCAGAAAGTCCTGAAATGGCTGTTGCACTGATGAGGAAGGCAACAATAAATGTGGGTGGACATGTGCTAAGTGCAACAACCATAGAGCACTTCATTCTTAGACTTCCTTATCATTGGAGATTTACATTTTCCAAGGGAACAAAAAATCATGAAATGACAGTAAGAAGCGTGTATGGACTGGAACTGTCAGAACCCCTTGTTACATTTGCTCTCTCCTGTGGAACCTGGTCCTCTCCTGCTGTGAGAGTTTACACTGCATCTCAGGTTGAGAATGAGCTGGAAGTGGCCAAAAGAGAGTTCTTACATGCAGCAATTGGATTTTCAACTTCAAAGTTTGCTCTCCCTAAGCTGCTGGATTGGTATTTACTGAACTTTGCAAAAGACTTGGAATCATTGCTGGACTGGATCTGCCTCCAGTTACCAAGTGAACTTGGGAAACAAGCCATAAAACTGCTAGAGGAAAGAAAAACTGAGCCCCTCTCACAGTTTGTACAAATAATGCCATATGAGTTCGGCTTTAGATACTTGATATGCACATAA 1608 0.4024 MMQGSSRNANKTGKTSSRERKLALKQDVDRLKKKLRHEENIHRALERAFNRPLGALPRLPPYLPPYILALLAEVAVLEEEIVRLEEKIVHFRQDLYQEAVYMSYSMRKLEHSVSAPPNKSNSTTDSPKLEKLKFQSQTVGNSAASSATKPTTTLTEDKENQSCSNSSKSRNQSSNHMNKYPIRKLHNKSPQKRLDHPKIKQEPRLNSQQIGDLRNHSTHKSSPEAERPNIISENIVKCLSSILLRMSAVKNPSSACDIPHLCDLRPKNCDEGTEFVDPYGICLEFGKRDIGPYKQLCEIDAKSFNPKRTANTLFLQHRLKKLESVNLENLNHQEKLAFWINIYNSCMMNAFIENGIPESPEMAVALMRKATINVGGHVLSATTIEHFILRLPYHWRFTFSKGTKNHEMTVRSVYGLELSEPLVTFALSCGTWSSPAVRVYTASQVENELEVAKREFLHAAIGFSTSKFALPKLLDWYLLNFAKDLESLLDWICLQLPSELGKQAIKLLEERKTEPLSQFVQIMPYEFGFRYLICT 535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g03034 535 Pfam Protein of unknown function, DUF547 328 457 IPR006869 -
Vimu1g03034 535 MobiDBLite consensus disorder prediction 1 26 - -
Vimu1g03034 535 Pfam Leucine-zipper of ternary complex factor MIP1 17 98 IPR025757 -
Vimu1g03034 535 PANTHER EXPRESSED PROTEIN 9 533 - -
Vimu1g03034 535 MobiDBLite consensus disorder prediction 135 227 - -
Vimu1g03034 535 MobiDBLite consensus disorder prediction 135 180 - -
Vimu1g03034 535 Coils Coil 14 48 - -
Vimu1g03034 535 Coils Coil 67 94 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g03034 Vimu-Chr1 42770418 42774584 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu1g03034 1 42770418 42774584 Vimu1g03034 1 42770418 42774584 ECH
Vimu1g03034 1 42770418 42774584 Vimu10g03335 10 43493032 43496048 PCT