Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g03031 ATGTGGCGCGTGCTTCTCATATCTAAGCTTCTGACTGTTATTCGCAATAAGCAAACTGGCTTATCAGAGGGTTACGGATTTGTGGAGTTCTATTCACATGCTACTGCTGAGAAAGTTTTGCAAAACTATGCTGGAATTTTGATGCCCAATACAGAACAAGCATTCCGTCTAAACTGGGCATCATTTAGCACAGGAGACAAGGGTTCAGATAATGTTCCTGATCTTTCTATTTTTGTAGGAGATTTAGCTGCAGATGTTACAGATAGTTTGTTGCATGAAACTTTTGCTAGTGTGTTTCCTTCTGTTAAAGCTGCAAAAGTTGTTTTTGATGCCAATACTGGCCGTTCAAAGGGCTATGGTTTCGTCAGGTTTGGCGATGACAGTGAAAGATCCCAGGCCATGACTCAGATGAATGGTGTTTACTGTTCCAGCAGGCCTATGCGCATTGGTGCTGCAACTCCAAGGAAATCATCTGGCCATCCACAGGGAATAGTCTTGGTTGTTGATGTTGCTTTTGTTTTTCCCATTTCTTGCCATGGTAAGAGTTTGAAATATTTCTACCAGCTTTGTATTGATTTTTCAAATGGCACATCCAGCCAATCTGAAGCAGATTCTACCAACACAACAATATTTGTTGGAGGACTCGACCCTAATGTTTCAGATGAGGACCTCAGGCAGCCATTCTCCCAGTACGGTGAGATAGTCTCTGTTAAGATACCCGTTGGAAAGGGATGTGGTTTTGTCCAGTTTGCAAACAGAAATAATGCTGAAGAGGCGTTGCAGAAGCTAAACGGGACAACAATTGGAAAGCAGACAGTCCGACTTTCTTGGGGCCGTAATCCAGCAAATAAGCAGTTTAGAATGGATTTCGGCAACCCCTGGACAGGGGCATATTATGGGGCTCCTATTTATGATGGTTATGGATACGCATTGCCTCCTCGTCATGATCCCAGCATATATGCTGCTGCGTATGGGGCTTACCCTCTTTATGGTGCCCACCAGCAACAATGCAATAGAGAAGTAGCTTTCACAACAAGTTACGCAGAATCACCCTTCAATGTGCAAATTAACTTCTCTCGCTTTCCTGAAGTAGCGCTGTAG 1101 0.4369 MWRVLLISKLLTVIRNKQTGLSEGYGFVEFYSHATAEKVLQNYAGILMPNTEQAFRLNWASFSTGDKGSDNVPDLSIFVGDLAADVTDSLLHETFASVFPSVKAAKVVFDANTGRSKGYGFVRFGDDSERSQAMTQMNGVYCSSRPMRIGAATPRKSSGHPQGIVLVVDVAFVFPISCHGKSLKYFYQLCIDFSNGTSSQSEADSTNTTIFVGGLDPNVSDEDLRQPFSQYGEIVSVKIPVGKGCGFVQFANRNNAEEALQKLNGTTIGKQTVRLSWGRNPANKQFRMDFGNPWTGAYYGAPIYDGYGYALPPRHDPSIYAAAYGAYPLYGAHQQQCNREVAFTTSYAESPFNVQINFSRFPEVAL 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g03031 366 SUPERFAMILY RNA-binding domain, RBD 194 308 IPR035979 GO:0003676
Vimu1g03031 366 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 75 154 IPR000504 GO:0003723
Vimu1g03031 366 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 208 280 IPR000504 GO:0003723
Vimu1g03031 366 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 12 284 - -
Vimu1g03031 366 SMART rrm1_1 76 150 IPR000504 GO:0003723
Vimu1g03031 366 SMART rrm1_1 209 276 IPR000504 GO:0003723
Vimu1g03031 366 CDD RRM3_NGR1_NAM8_like 207 278 - -
Vimu1g03031 366 FunFam Polyadenylate-binding protein RBP47B 63 164 - -
Vimu1g03031 366 Gene3D - 74 151 IPR012677 -
Vimu1g03031 366 Gene3D - 8 61 IPR012677 -
Vimu1g03031 366 Gene3D - 194 286 IPR012677 -
Vimu1g03031 366 FunFam Polyadenylate-binding protein RBP47 193 310 - -
Vimu1g03031 366 CDD RRM2_SECp43_like 74 153 - -
Vimu1g03031 366 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 210 273 IPR000504 GO:0003723
Vimu1g03031 366 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 12 51 IPR000504 GO:0003723
Vimu1g03031 366 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 77 146 IPR000504 GO:0003723
Vimu1g03031 366 SUPERFAMILY RNA-binding domain, RBD 12 61 IPR035979 GO:0003676
Vimu1g03031 366 SUPERFAMILY RNA-binding domain, RBD 57 160 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g03031 Vimu-Chr1 42751513 42753943 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g03031 19 288 Eukaryotic Initiation Factors Gene Family AT4G34110 26.182 4.31e-21 92.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu1g03031 1 42751513 42753943 Vimu1g03031 1 42751513 42753943 ECH
Vimu1g03031 1 42751513 42753943 Vimu10g03328 10 43400350 43404296 PCT