Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g03024 ATGGAAGCAACTCAAACTCCAAGCAAAGGTGATGATGGAGACCTGATTACTGTGCTGAGTATTGATGGTGGTGGCATTCGCGGAATCATTCCAGGAGTTATACTGGGTTTCCTCGAATCAGAGCTTCAGAAGCTAGATGGTGCTGATGCAAGGCTAGCAGATTACTTTGATGTGATTGCAGGAACAAGCACTGGTGGATTAGTCACTGCAATGCTTACTGCTCCAGATGAAAACGGCAGACCCTTGTACGCAGCCAAAGATATTAAGGATTTCTACCTTGAGCATACCCCAAAAATCTTCCCACAGAATAGTGGCTGGAATTTAATCGCATCATTGATCAAATACGGCAGAACTCTGATGGGACCACAGTACGATGGCAAGTATTTACACAAGCTCATTAGGGAAAAACTAGGGGACACAAAATTGCAACACACATTAACCAATGTCGTTATCCCCGCATTTGATATCAAACACCTTCAACCCACCATCTTTTCCAGCTTCCAGGTGAAGAAGAGACCATACTTGAATGGGTCGTTGTCTGATATATGCATTTCAACCTCAGCAGCACCAACCTATCTTCCAGCTCATTCCTTTGAAACCAAAACCCACCATGGTAGTTTCAAATTCGACCTCGTAGATGGTGGTGTAGCAGCAAATAACCCGGCACTGGTGGCGATGGCGGAAGTTTCGAACCAAATCAAGAATGAAGGGTCATGTGAAAGCTTGAACGTAAAGCCGTTGCAATACAAAAAGTTTTTGGTGATATCGTTGGGAACAGGTTCTCAGCAACATGAAATGAAATACAATGCTGCTAAGGCATCTAAATGGGGCGTTTTGGGCTGGGTTTCCTCCTCCGGTGGCAATCCTCTGATCGATGTCTTCAGTCATGCTAGTTCTGACATGGTTGATTTTCACATCTCCTCCGTTTTCCAAGCACGCAACGCTGAAGAAAACTACCTCCGAATCCAGGACGATACTTTAACTGGAGACTTGTCTTCGGTTGACATTGCCACGGAGAAGAATTTGAATGGCCTCGTCCAAGTTGCGGAAGAATTGTTAAAGAAAACAGTTTCAAAGATTAACTTGACGACTGGTATTCATGAACCTGTTAAGTCTAATGAAACCAACGCAGAAGCCTTGACCAGAGGAGATTTCGGAAATCTCAAATATTTGCGAACAATGGGAATATTTGAAAGACGAAGAGATAAGAGATACTTGTGGGTTGGCCAATATGAATATGATAAATGA 1248 0.4351 MEATQTPSKGDDGDLITVLSIDGGGIRGIIPGVILGFLESELQKLDGADARLADYFDVIAGTSTGGLVTAMLTAPDENGRPLYAAKDIKDFYLEHTPKIFPQNSGWNLIASLIKYGRTLMGPQYDGKYLHKLIREKLGDTKLQHTLTNVVIPAFDIKHLQPTIFSSFQVKKRPYLNGSLSDICISTSAAPTYLPAHSFETKTHHGSFKFDLVDGGVAANNPALVAMAEVSNQIKNEGSCESLNVKPLQYKKFLVISLGTGSQQHEMKYNAAKASKWGVLGWVSSSGGNPLIDVFSHASSDMVDFHISSVFQARNAEENYLRIQDDTLTGDLSSVDIATEKNLNGLVQVAEELLKKTVSKINLTTGIHEPVKSNETNAEALTRGDFGNLKYLRTMGIFERRRDKRYLWVGQYEYDK 415
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g03024 415 ProSiteProfiles Patatin-like phospholipase (PNPLA) domain profile. 19 226 IPR002641 GO:0006629
Vimu1g03024 415 FunFam Patatin 7 392 - -
Vimu1g03024 415 Pfam Patatin-like phospholipase 19 226 IPR002641 GO:0006629
Vimu1g03024 415 Gene3D Cytosolic phospholipase A2 catalytic domain 5 384 - -
Vimu1g03024 415 PANTHER XYLOSE ISOMERASE 3 382 - -
Vimu1g03024 415 SUPERFAMILY FabD/lysophospholipase-like 16 370 IPR016035 -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Vimu1g03024 Vimu-Chr1 42677205 42679367 Dispersed/Tandem
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g03024 13 382 Miscellaneous Gene Families AT2G26560 61.725 1.48e-162 461
       

Event-related genes


Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu1g03024 1 42677205 42679367 Vimu1g03024 1 42677205 42679367 ECH
Vimu1g03024 1 42677205 42679367 Vimu10g03325 10 43385698 43387907 PCT