Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g03023 ATGGAAGCAACTCAAACTCCAAGCAAAGGTGATGATGGATCCCTGATTACTGTGCTGAGTATTGATGGTGGTGGCATTCGCGGAATCATTCCAGGAGTTATACTGGGTTTCCTCGAATCAGAGCTTCAGAAGCTGGATGGTGCTGATGCAAGGCTAGCAGATTACTTTGATGTGATTGCAGGAACAAGCACCGGTGGATTAGTTACTGCAATGCTTACTGCTCCAGATGAAAACGGCAGACCCTTGTACGCAGCCAAAGATATTAAGGATTTCTACCTTGAGCATACCCCAAAAATCTTCCCACAGAAAAGTGTGATTTTCCAAATACAGTGGCTGGAATTTAATCGCATCATTGATGAAATACAGCAGAACTCTGATGGGACCACAGTACAATGGCAAGTGAAGGAGCGGCCATACTTGAATGGGTCGTTGTCTGATATATGCATTTCAACCTCAGCAGCACCAACCTATCTTCCAGCTCATTCCTTTGAAACCAAAACCAACAATGATAGTTTCAAATTCGACCTTGTAGATGGTGGTGTAGCAGCAAATAATCCGGCACTGGTGGCCATGGCAGAAGTGTCGAACCAAATCCGCAATGAAGGGTCATGTGGAAGCTTGAATGTAAAACCGTTGCAATACAAAAAGTTTTTGGTGATATCGTTGGGAACAGGTTCTCAGCAACATGAACTGAAATACGATGCTGTTAAGGCATCTAAATGGGGCGTTTTGGGCTGGGTTTCCTCCTCCGGTGGCAATCCTCTGATCGATGTCTTCAGTCATGCTAGTTCTGACATGGTTGATTTCCACATCTCCTCCGTTTTCCAAGCACGCAACGCTGAAGAAAACTACCTCCGAATCCAGGACGATACTCTAAATGGGGACTTATCTTCGGTGGATGGGGCCACGGAGAAGAATTTGAAAGGCCTCGTCCAAGTTGCGGAAGCATTGTTAAAGAAACCAGTTTCAAAGATTAACTTGAGGACTGGTATTCATGAACCTGTTGAGTCTAACGAAACCAACGCAGAAGCCTTGATCAGGTTTGCGATACGACTATCTGAACAGAAGAGATTTCGGAAATCTCAAACGTTTGCGAAGAATGAGAATATTTGA 1113 0.4456 MEATQTPSKGDDGSLITVLSIDGGGIRGIIPGVILGFLESELQKLDGADARLADYFDVIAGTSTGGLVTAMLTAPDENGRPLYAAKDIKDFYLEHTPKIFPQKSVIFQIQWLEFNRIIDEIQQNSDGTTVQWQVKERPYLNGSLSDICISTSAAPTYLPAHSFETKTNNDSFKFDLVDGGVAANNPALVAMAEVSNQIRNEGSCGSLNVKPLQYKKFLVISLGTGSQQHELKYDAVKASKWGVLGWVSSSGGNPLIDVFSHASSDMVDFHISSVFQARNAEENYLRIQDDTLNGDLSSVDGATEKNLKGLVQVAEALLKKPVSKINLRTGIHEPVESNETNAEALIRFAIRLSEQKRFRKSQTFAKNENI 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g03023 370 SUPERFAMILY FabD/lysophospholipase-like 16 335 IPR016035 -
Vimu1g03023 370 Pfam Patatin-like phospholipase 112 191 IPR002641 GO:0006629
Vimu1g03023 370 Pfam Patatin-like phospholipase 19 76 IPR002641 GO:0006629
Vimu1g03023 370 ProSiteProfiles Patatin-like phospholipase (PNPLA) domain profile. 19 191 IPR002641 GO:0006629
Vimu1g03023 370 PANTHER XYLOSE ISOMERASE 134 361 - -
Vimu1g03023 370 Gene3D Cytosolic phospholipase A2 catalytic domain 120 365 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g03023 Vimu-Chr1 42661051 42663038 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g03023 13 359 Miscellaneous Gene Families AT2G26560 50.919 2.63e-126 367
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu1g03023 1 42661051 42663038 Vimu1g03023 1 42661051 42663038 ECH