Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g03022 ATGGTTTATTTCATTCCATCTCTCTCTCTCTTTCTCTTTGTCTCAGTAAGTCATCAATTGAGATCTATGGAAGCAACTCAAAAAAGTGAAGATGGACACCTGATTACTGTGCTGAGTATCGATGGTGGTGGCATTCGGGGAATCATTCCAGGAGTTTTACTTGCTTTCCTTGAATCAGAACTTCAGAAGCTGGATGGTGCTGATGCAAGGCTAGCAGATTACTTTGATGTGATTGCAGGAACAAGTACTGGTGGATTAGTCACTGCAATGCTCACTGCTCCAAATAAAAATAACCGACCCTTGTATGCAGCCCAAGATATTAAGAAATTCTACCTTAAGCATTCCCCAAATATCTTCCCACAGAGTAGTCCCTGGAATATATTCTCAACGGCGATGAAGTTCGGAAGAACTCTGACTGGACCACAGTACGACGGCAAGTATTTACACAAGCTCATTAGGGAAGAACTAGGGGACACAAAATTGGAACAAACATTAACCAATGTCGTTATCCCAGCATTTGACATCAAAAACCTTCAACCCACCATCTTTTCCAGCTTCCAGGTGAAGAAGAGGCCAGATTTGAATGGGTTGTTGTCTGATATATGCATTTCAACTTCAGCAGCTCCAACCTACCTTCCAGCTCATTCCTTTGAAACCACAACCCCCGATGGTCCTTCCAAATTTGACCTTATAGATGGTGGTGTAGCAGCAAATAACCCGGCACTGGTGGCGATGGCAGAAATGTCGAACAAAATCCACAGTGAAGGTTCATATGAAAACTTCGATGTGAAAGCGATGCAATACAGTAAGTTTTTGGTGATATCATTGGGAACAGGTTCTGCGAAACAAGATATGAAATACAGTGCTGCCGAGGCAACTTCATGGGGCGCGTTGAGCTGGGTTTCCAACGCCAAAGGCACTCCTATAATCGATGTCTTCACTGAAGCTAGTTCTGACATGGTTGATTTCCACATCTACTCGGTTTTCCAAGCACGCAATGCTGAAGAAAACTACCTCCGAATCCAGGACGATAGTTTAACTGGGGAATTGTCTTCGGTTGACATTGCCACGGAGAAGAATTTGAATGGCCTCGTCCAAGTTGCGGAAGAATTGTTAAAGAAAAAAGTTGCAAAGATTAACTTGAGGACTGGTGTTCATGAAAATGTTGATTCTAACGAAACAAATGCAGATGCCTTGAAGAGGTTTGCGGAACGACTATCCAAACAAAGGAGATTTCGTAAATCTGTAATGGCTATGTACAATGGGAAATTTTCAAAGATGAAGGCATGA 1290 0.4264 MVYFIPSLSLFLFVSVSHQLRSMEATQKSEDGHLITVLSIDGGGIRGIIPGVLLAFLESELQKLDGADARLADYFDVIAGTSTGGLVTAMLTAPNKNNRPLYAAQDIKKFYLKHSPNIFPQSSPWNIFSTAMKFGRTLTGPQYDGKYLHKLIREELGDTKLEQTLTNVVIPAFDIKNLQPTIFSSFQVKKRPDLNGLLSDICISTSAAPTYLPAHSFETTTPDGPSKFDLIDGGVAANNPALVAMAEMSNKIHSEGSYENFDVKAMQYSKFLVISLGTGSAKQDMKYSAAEATSWGALSWVSNAKGTPIIDVFTEASSDMVDFHIYSVFQARNAEENYLRIQDDSLTGELSSVDIATEKNLNGLVQVAEELLKKKVAKINLRTGVHENVDSNETNADALKRFAERLSKQRRFRKSVMAMYNGKFSKMKA 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g03022 429 Pfam Patatin-like phospholipase 38 245 IPR002641 GO:0006629
Vimu1g03022 429 Gene3D Cytosolic phospholipase A2 catalytic domain 22 418 - -
Vimu1g03022 429 FunFam Patatin 27 418 - -
Vimu1g03022 429 SUPERFAMILY FabD/lysophospholipase-like 35 397 IPR016035 -
Vimu1g03022 429 ProSiteProfiles Patatin-like phospholipase (PNPLA) domain profile. 38 245 IPR002641 GO:0006629
Vimu1g03022 429 PANTHER XYLOSE ISOMERASE 21 415 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g03022 Vimu-Chr1 42648558 42650769 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g03022 32 413 Miscellaneous Gene Families AT2G26560 61.198 1.07e-164 467
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu1g03022 1 42648558 42650769 Vimu1g03022 1 42648558 42650769 ECH