Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g02980 ATGCCTGTGTTCATCCCTACTACGGATCCATACAAGAACCTGCCTCCAAAGATAATCATGACAGAAAATCAAATAAGAGAGATTTTGATAAAAGCAGATTGTAATAGAGATGGATATCTGAGCAAGGATGAACTGAAGAAAGCTTTCAAGGAGTTTGGTTCCAAGTTACCAGGTTGGAGAGCAGGTCGTTTCCTGAAGAAACTTGACAACCGTGAAGAACAACTCAACATGGAAGAACTCAACATTGTTGTTGATTATGTTCTTGCTAGAGAAAAGGAGTTTCCTCAGACTGTGACGATGCACAAAATAATGAATGTATTGAAAGAAGCAGACATAAACAAAGATGGTCATTTCAACAAAGAAGAACTGAAGCATGCTCTCAAAGACTTAGGTTCCTTCTTCCCTGCTTGGAGAGCCAAACGTGCTTTTAGAAAAATCGATGCCAACCACGACGGTCAAATCAGCGGTGAGGAAATCGACTCTCTCCTCGAGTATCTTCATTCTCGTGGTTTTGGAAAATAA 522 0.4023 MPVFIPTTDPYKNLPPKIIMTENQIREILIKADCNRDGYLSKDELKKAFKEFGSKLPGWRAGRFLKKLDNREEQLNMEELNIVVDYVLAREKEFPQTVTMHKIMNVLKEADINKDGHFNKEELKHALKDLGSFFPAWRAKRAFRKIDANHDGQISGEEIDSLLEYLHSRGFGK 173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g02980 173 ProSiteProfiles EF-hand calcium-binding domain profile. 98 133 IPR002048 GO:0005509
Vimu1g02980 173 SMART efh_1 24 52 IPR002048 GO:0005509
Vimu1g02980 173 SMART efh_1 138 166 IPR002048 GO:0005509
Vimu1g02980 173 SMART efh_1 102 130 IPR002048 GO:0005509
Vimu1g02980 173 CDD EFh 102 158 IPR002048 GO:0005509
Vimu1g02980 173 Pfam EF-hand domain pair 23 127 IPR002048 GO:0005509
Vimu1g02980 173 ProSiteProfiles EF-hand calcium-binding domain profile. 138 169 IPR002048 GO:0005509
Vimu1g02980 173 ProSiteProfiles EF-hand calcium-binding domain profile. 20 55 IPR002048 GO:0005509
Vimu1g02980 173 ProSitePatterns EF-hand calcium-binding domain. 147 159 IPR018247 -
Vimu1g02980 173 ProSitePatterns EF-hand calcium-binding domain. 33 45 IPR018247 -
Vimu1g02980 173 SUPERFAMILY EF-hand 23 161 IPR011992 -
Vimu1g02980 173 Pfam EF hand 142 159 IPR002048 GO:0005509
Vimu1g02980 173 Gene3D - 12 92 - -
Vimu1g02980 173 Gene3D - 105 165 - -
Vimu1g02980 173 PANTHER CALCIUM BINDING PROTEIN 32 160 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g02980 Vimu-Chr1 42183370 42186994 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g02980 12 163 EF-hand Containing Proteins AT1G18210 24.026 7.04e-07 45.4