Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g02979 ATGACTAAACCTCATCCCAACTCCAATTCACCATTAAAGACAAAAACTGAGCTGAGAAATGACTTTCATGAGACTGTGACGAAGCAGAAAATAATGAATGTGTTGAAAGAAGCAGACATAAACGAAGATGGTCATTTCAACGAAGAAGAACTGAAGCATGCTCTCAAAAACTTAGGTGCCTTCTTCCCTGCCTGGAGAGCCAAACGTGCTTTTCAAAAATTTGATGCCAACAACGACGGTCAAATCAGCGATGTGCCGGATAGAAAGGACTTTCATGAGAGTGTGATGATGCAAAAGATAATGATTTCATTGAAAGAAGCAGACACAAACAAAGATGGTCGCTACAACAAGGATGAACTCAAGCATGCTGTCAAAGACTTAGGTGCCTTCTTCCCTGCCTGGAGAGTCCGTCGTGCTTTTAACAAAGTTGATGTCAACCATGACGGTCAAATCAGCGGAAGGGAAATCGATTCTCTACTCGAGTATCTTTGTTCTCATGGGTATGGAAAATAA 513 0.4152 MTKPHPNSNSPLKTKTELRNDFHETVTKQKIMNVLKEADINEDGHFNEEELKHALKNLGAFFPAWRAKRAFQKFDANNDGQISDVPDRKDFHESVMMQKIMISLKEADTNKDGRYNKDELKHAVKDLGAFFPAWRVRRAFNKVDVNHDGQISGREIDSLLEYLCSHGYGK 170
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g02979 170 ProSiteProfiles EF-hand calcium-binding domain profile. 135 166 IPR002048 GO:0005509
Vimu1g02979 170 ProSitePatterns EF-hand calcium-binding domain. 144 156 IPR018247 -
Vimu1g02979 170 PANTHER CALCIUM BINDING PROTEIN 21 95 - -
Vimu1g02979 170 ProSiteProfiles EF-hand calcium-binding domain profile. 95 130 IPR002048 GO:0005509
Vimu1g02979 170 ProSiteProfiles EF-hand calcium-binding domain profile. 26 61 IPR002048 GO:0005509
Vimu1g02979 170 Gene3D - 85 165 - -
Vimu1g02979 170 Gene3D - 7 84 - -
Vimu1g02979 170 SMART efh_1 66 98 IPR002048 GO:0005509
Vimu1g02979 170 SMART efh_1 99 127 IPR002048 GO:0005509
Vimu1g02979 170 SMART efh_1 30 58 IPR002048 GO:0005509
Vimu1g02979 170 SMART efh_1 135 163 IPR002048 GO:0005509
Vimu1g02979 170 SUPERFAMILY EF-hand 27 158 IPR011992 -
Vimu1g02979 170 Pfam EF hand 104 122 IPR002048 GO:0005509
Vimu1g02979 170 Pfam EF hand 70 83 IPR002048 GO:0005509
Vimu1g02979 170 Pfam EF hand 138 156 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g02979 Vimu-Chr1 42174191 42178969 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g02979 34 161 EF-hand Containing Proteins AT1G05990 27.941 5.59e-10 53.5