Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g02978 ATGTCACAGCCATATGTCTACGAAAGCAGAAGGCCAGTGAGAATAATCCCTACTCTACCAGGGAAGACAATAGTGGTGTCTGGTATACAAACCAAGACAATAGCTGATAGTTTCACCATGCAGAAAATAATGGAAGCACTGCATAATGCAGACAGAGACAAAAATGGCAGTTACAACAAAGATGAACTCAAGCAAGCCCTCAGAGACTTAGGTGCCTACTTCCCTGGTTGGAGAGCCTTTCGTGCTTTCGGAAAAGCTGATGCCAACAATGACGGTCAAATTAGCGGCGAAGAAATCGACACTCTCATTGAGTATCTTCATTCTTGTGGCTTTGGAAAATAG 342 0.4357 MSQPYVYESRRPVRIIPTLPGKTIVVSGIQTKTIADSFTMQKIMEALHNADRDKNGSYNKDELKQALRDLGAYFPGWRAFRAFGKADANNDGQISGEEIDTLIEYLHSCGFGK 113
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g02978 113 Gene3D - 27 108 - -
Vimu1g02978 113 ProSiteProfiles EF-hand calcium-binding domain profile. 38 73 IPR002048 GO:0005509
Vimu1g02978 113 Pfam EF hand 81 102 IPR002048 GO:0005509
Vimu1g02978 113 CDD EFh 42 103 IPR002048 GO:0005509
Vimu1g02978 113 ProSiteProfiles EF-hand calcium-binding domain profile. 81 109 IPR002048 GO:0005509
Vimu1g02978 113 ProSitePatterns EF-hand calcium-binding domain. 87 99 IPR018247 -
Vimu1g02978 113 SMART efh_1 78 106 IPR002048 GO:0005509
Vimu1g02978 113 SMART efh_1 42 70 IPR002048 GO:0005509
Vimu1g02978 113 SUPERFAMILY EF-hand 38 99 IPR011992 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g02978 Vimu-Chr1 42164315 42164656 Dispersed/Tandem