Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g02959 ATGCCACGGGTCGGGAACGTACTCTCAGATTATGTTGATTGGAGGAAGGAAGACGTTGTTGTCCCAGTAAAAGACCAAGGAAGCTGCGAATTGGTTGGTGAAAGAAGCGTTTTCTTCAGATCTCGCAGCTGGAGAACCATGGAATATCTAGGGATTGATCTTAGCTGCGCCGTGGGATCGCTCCGCCACGGCCACTTTCCGGAGAAGGATTGCCTGCTCCCTCTCATTTCCAAACTCCTCGGTTATGCCATCGTCGCCGCCTCCACAACCGTCAAACTCCCCCAGGCACTAATCATTATGAAAATTCTGAAGCATAAGAGTGTGAGGGGCCTTAGCATGATCTCCTTTGAGCTCGAAGTTATTGGATACACCATCGCTTTGGCTTACTGTCTCCACAAAGGTCTTTCATTCTCGGCTTACGGAGAGTTGCTGTTTCTTTTGATCCAAGCTATAATATTGGTTTCTGTAATCTACTATTACTCTCGACCTTTGAGCACAATAACATGCATCCGGGCGTTGCTATATTCTGCTATAGCACCCACTATCTTTGCTGGTCAAATTGATCCTTTACTCTTTGAAGCTCTGTATGCATCCCAGCATGCAATTTTTCTCTTTGCCAGGATCCCACAAATATGGCAAAACTTTTCTAATAAAAGTACTGGGGAACTCAGCTTCTTAACTTCTTTTATGAATTTTGCTGGTTCAATGGTTAGAGTATTCACAACTATCCAAGAAAATGCACCAAACAGTGGTAAGTTGATGCTTAATTTGTTTTGTTCTCTTGGGCTATGCAATTGGTGTCGCAACAAATTTTACCATCCTAAGTCAGATAATATTATACCAAAAACCCCAGGTCCAAAAGGAGAAGAAAACCAAGTGATAGAACCGTATCGAGTTGTGTATATCTTCAATGTGCTCATCAAACGTCTTATTTCAAGTTTATACTGCTGA 951 0.429 MPRVGNVLSDYVDWRKEDVVVPVKDQGSCELVGERSVFFRSRSWRTMEYLGIDLSCAVGSLRHGHFPEKDCLLPLISKLLGYAIVAASTTVKLPQALIIMKILKHKSVRGLSMISFELEVIGYTIALAYCLHKGLSFSAYGELLFLLIQAIILVSVIYYYSRPLSTITCIRALLYSAIAPTIFAGQIDPLLFEALYASQHAIFLFARIPQIWQNFSNKSTGELSFLTSFMNFAGSMVRVFTTIQENAPNSGKLMLNLFCSLGLCNWCRNKFYHPKSDNIIPKTPGPKGEENQVIEPYRVVYIFNVLIKRLISSLYC 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g02959 316 Pfam PQ loop repeat 76 138 IPR006603 -
Vimu1g02959 316 Pfam PQ loop repeat 200 249 IPR006603 -
Vimu1g02959 316 Gene3D - 76 166 - -
Vimu1g02959 316 Gene3D - 200 278 - -
Vimu1g02959 316 PANTHER MANNOSE-P-DOLICHOL UTILIZATION DEFECT 1 LEC35 -RELATED 48 263 IPR016817 -
Vimu1g02959 316 SMART ctns 205 236 IPR006603 -
Vimu1g02959 316 SMART ctns 90 124 IPR006603 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g02959 Vimu-Chr1 41984196 41991567 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g02959 47 250 Miscellaneous Gene Families AT4G07390 76.961 4.20e-113 325
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu1g02959 1 41984196 41991567 Vimu1g02959 1 41984196 41991567 ECH