Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g02958 ATGGGCCAATCGGCGTCCTCTGCCGCAGCCGTTGCTTGTCGTCGCGAGAGGGACCAAGGCAACCGCTCTGTCAACATCTCTAAGACCAGATCCACAGCTTCGGTTTCGCCGATGGTTGGTTATTCCTATGGCACAGGCGAAGGCGACAGTGAAAACCGCCGTGTTGAGGCGGTAACCGATGGAACCACCGACTACATATCTGATCTCCCGAACGAGTGTCTGGCTTCGGTGTTTCAGTTTCTTAGCTCCGCTGATCGGAACCGCTGTTCGCTCGTTTGCCAGCGGTGGCTCCAGATCGAAGGACAGAGCCGCCACCGTCTCTCTCTGAACGCTGAAGCAGAGCTGTTTTCGGCGATTCCGTCGATCTTTTCTCGGTTCGACTCGGTCACGAAGCTTGCGCTGAAGTGCGACCGTAGATCCGTGAGCATACGCGACGACTCGCTGGTGCTGATCTCGCAGCGGTGCCCTAACCTCACGCGCCTCAAGCTACGCGCGTGCCGGGAGCTAACCGACGCTGGAATGGAAGCGTTTGCAAAAAACTGTAAGGGATTGAAGAAGCTTTCGTGCGGATCGTGCACGTTTGGATCCAAAGGAATGAACGCGGTGCTCGACAACTGTGCCTTGCTGGAGGAGCTCTCCGTGAAGCGCCTCCGCGGAATCACCGACGCCGCAGCGGCGGAACCGATTGGACCTGGTGTTGCGGGGTCGTCGCTGAGGACCATTTGCCTGAAGGAGCTCTACAACGGACAGTGTTTCGGAACGCTTATTCTCGGTGCGAAGAATCTAAAGACCTTGAAGCTTTTCCGGTGCTCTGGCGATTGGGACCGGCTTTTTCAATTAATGGTTGATAGAATGACTAAAATGGTTGAGGTTCACCTCGAGAGGCTTCAGATTAGCGACATTGGACTGCAAGCGATCGCGAATTACTCGAATTTGGAGATTTTGCATCTTGTTAAGACCCCTGAATGTTCTGATATTGGACTTATTGCAATTGCAGACAGGTGCAAGCTTTTGCGGAAGCTTCACATTGATGGATGGAAGGCGAATCGAATTGGCGATGATGGGTTGATAGGTGTTGCTAAAGGTTGCCCTAATTTGCTTGAATTAGTGCTAATTGGGGTTAACCCTACTAAGGTGAGTTTGGAAATGTTGGCATCTAATTGCCAGAATCTTGAGCGGTTGGCTTTGTGTGGAAGTGATTCGGTAGGTGATCCTGAAATTTCTTGCATTGCTGCTAAGTGCGTGGCTTTGAAGAAACTGTGTATTAAGAGTTGTCCTGTTTCGGATCAAGGGATGGAGGCATTGGCGAATGGGTGTCCCAATTTGGTGAAAGTGAAGGTTAAGAAGTGTAAGGGGGTTACCCCTGAGGGTGGGGATTGGTTGAGGAGGACTAGAGGGTCAGTTGCTGTTAACTTAGATACTGGTGAGGCAGAGCTTCAGGAAGCTAGTGCTAGTGATGGAGGGGCACAGGAAAATGGTTTAGAGTTCCCTCAAATGCCTGCCCAAATAGCTGCGGCAGCATCATCAACATCGGGCAGCACCGCCCGATCTAGTTCGTTCAAGTCGAGGTTAGGACTTTTATCTGGGAGGAGTATAGTGGCTAACACTTTGAGGAGATGGTCAGGTGGTAGCACTAGTGCACGCCATGGTTAG 1653 0.5185 MGQSASSAAAVACRRERDQGNRSVNISKTRSTASVSPMVGYSYGTGEGDSENRRVEAVTDGTTDYISDLPNECLASVFQFLSSADRNRCSLVCQRWLQIEGQSRHRLSLNAEAELFSAIPSIFSRFDSVTKLALKCDRRSVSIRDDSLVLISQRCPNLTRLKLRACRELTDAGMEAFAKNCKGLKKLSCGSCTFGSKGMNAVLDNCALLEELSVKRLRGITDAAAAEPIGPGVAGSSLRTICLKELYNGQCFGTLILGAKNLKTLKLFRCSGDWDRLFQLMVDRMTKMVEVHLERLQISDIGLQAIANYSNLEILHLVKTPECSDIGLIAIADRCKLLRKLHIDGWKANRIGDDGLIGVAKGCPNLLELVLIGVNPTKVSLEMLASNCQNLERLALCGSDSVGDPEISCIAAKCVALKKLCIKSCPVSDQGMEALANGCPNLVKVKVKKCKGVTPEGGDWLRRTRGSVAVNLDTGEAELQEASASDGGAQENGLEFPQMPAQIAAAASSTSGSTARSSSFKSRLGLLSGRSIVANTLRRWSGGSTSARHG 550
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g02958 550 SUPERFAMILY F-box domain 62 99 IPR036047 GO:0005515
Vimu1g02958 550 Gene3D Ribonuclease Inhibitor 110 468 IPR032675 -
Vimu1g02958 550 SUPERFAMILY RNI-like 109 472 - -
Vimu1g02958 550 Pfam Leucine Rich repeat 155 178 IPR001611 GO:0005515
Vimu1g02958 550 Pfam Leucine Rich repeat 417 436 IPR001611 GO:0005515
Vimu1g02958 550 CDD F-box_AtTIR1-like 66 104 - -
Vimu1g02958 550 FunFam F-box/LRR-repeat protein 3 isoform X1 65 105 - -
Vimu1g02958 550 Pfam F-box domain 66 99 IPR001810 GO:0005515
Vimu1g02958 550 ProSiteProfiles F-box domain profile. 63 99 IPR001810 GO:0005515
Vimu1g02958 550 SMART LRR_CC_2 310 334 IPR006553 -
Vimu1g02958 550 SMART LRR_CC_2 335 362 IPR006553 -
Vimu1g02958 550 SMART LRR_CC_2 414 438 IPR006553 -
Vimu1g02958 550 SMART LRR_CC_2 181 205 IPR006553 -
Vimu1g02958 550 SMART LRR_CC_2 155 180 IPR006553 -
Vimu1g02958 550 SMART LRR_CC_2 388 413 IPR006553 -
Vimu1g02958 550 SMART LRR_CC_2 206 244 IPR006553 -
Vimu1g02958 550 SMART LRR_CC_2 285 309 IPR006553 -
Vimu1g02958 550 MobiDBLite consensus disorder prediction 1 33 - -
Vimu1g02958 550 PANTHER UNCHARACTERIZED 67 477 - -
Vimu1g02958 550 SMART fbox_2 69 109 IPR001810 GO:0005515
Vimu1g02958 550 Gene3D - 65 104 - -
Vimu1g02958 550 FunFam F-box protein SKIP2 101 482 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g02958 Vimu-Chr1 41977750 41982334 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu1g02958 1 41977750 41982334 Vimu1g02958 1 41977750 41982334 ECH