Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g02956 ATGTCTCACCATTACCCAAAACCCCTTTTAGACACCCTATACTGCTTGGAGGACAACATTCATTTGGAGGAAGAAAAACAAAGAGAAGATGATGATTACATCGGTACAACCTCAAAACCAAACTTCTCCGATGTGGTCCTTTCAGAACAAGACCTCTTCTGGGATACCCAGGAACTCTCTTCTCTTCTCGCCAAAGAAAACCTTAACAACCTTTCCATCTCTCTCCCAAACAACCCTTCTCTTGCTTCTTCTCGCGGAGAAGCTGTGGACTGGATTCTCAAACTGAATCTTCACCATTCCTTTTCTACCCTCACAGCACTTCTCGCAGTTAACTACCTCGACAGGTTCCTCTTCACCCTCAGATTCCAGAACGACAAGCCGTGGCTCACGCAACTCGTTGCAGTGGCGTGCCTCTCTCTTGCAGCCAAAGTTGAAGAGACCCACGTGCCCCTTTTCGTGGACCTCCAAGTGGGGGAGAGTAAGTACCTTTTTGAAGCGAAAACGGTTAAGAGAATGGAAATCTTGGTCCTTTCCACACTCGGATGGAAGATGAACCCGGTAACACCTCTCTCGTTCCTTGATTACATCACGAGGAAACTCGGCTTAAAGGGTCATCTCTGCTTGGAGTTTCTCAGAAGGTGTGAAACCGTTCTTCTCTCTGTCTTCGCAGACTCGAGATTTATGAGTTTTCTTCCTTCTGTGTTGGCAACTGCGACGATGATGCGCGTGGTGAGTGTTGTGGAGCCTGGTTTGGGAGAGGAATACCAAGATCAGCTCTTGGGTATTCTCGGAATCGACAAGGAGAAGGTGAAAGAATGCTACGAGGTGATGATGGAGGTTGTGTCAGGGAAGAGTGAAGAGGGTAAACGAGGGAATTTGAAGAAAAGGAAGTTTGAGTGCATTCAGTGTAGCCGAAACGACGTGATGGAAGGGTCGTTTAGCTGTGATAGTTCGTGTGATTCATTGAAGAAAAGTAGGAGCCAAGATCAGCTTCTATTGAAGCATTCAAACTCAGATTTTCTCACCATTCCTCGCTAG 1038 0.4682 MSHHYPKPLLDTLYCLEDNIHLEEEKQREDDDYIGTTSKPNFSDVVLSEQDLFWDTQELSSLLAKENLNNLSISLPNNPSLASSRGEAVDWILKLNLHHSFSTLTALLAVNYLDRFLFTLRFQNDKPWLTQLVAVACLSLAAKVEETHVPLFVDLQVGESKYLFEAKTVKRMEILVLSTLGWKMNPVTPLSFLDYITRKLGLKGHLCLEFLRRCETVLLSVFADSRFMSFLPSVLATATMMRVVSVVEPGLGEEYQDQLLGILGIDKEKVKECYEVMMEVVSGKSEEGKRGNLKKRKFECIQCSRNDVMEGSFSCDSSCDSLKKSRSQDQLLLKHSNSDFLTIPR 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g02956 345 Gene3D - 82 185 - -
Vimu1g02956 345 CDD CYCLIN_AtCycD-like_rpt2 187 277 - -
Vimu1g02956 345 SUPERFAMILY Cyclin-like 61 185 IPR036915 -
Vimu1g02956 345 FunFam CYCLIN D32 186 275 - -
Vimu1g02956 345 FunFam D6-type cyclin 69 185 - -
Vimu1g02956 345 Pfam Cyclin, C-terminal domain 187 287 IPR004367 -
Vimu1g02956 345 PANTHER CYCLINS 31 284 IPR039361 -
Vimu1g02956 345 CDD CYCLIN_AtCycD-like_rpt1 85 182 - -
Vimu1g02956 345 Pfam Cyclin, N-terminal domain 77 185 IPR006671 -
Vimu1g02956 345 ProSitePatterns Cyclins signature. 85 116 IPR006671 -
Vimu1g02956 345 SMART Cyclin_C_2 187 307 IPR004367 -
Vimu1g02956 345 SMART cyclin_7 90 178 IPR013763 -
Vimu1g02956 345 SUPERFAMILY Cyclin-like 188 286 IPR036915 -
Vimu1g02956 345 Gene3D - 186 275 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g02956 Vimu-Chr1 41940139 41941687 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g02956 9 280 Core Cell Cycle Gene Families AT4G34160 50.368 1.21e-89 272
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu1g02956 1 41940139 41941687 Vimu7g02786 7 23432760 23434069 ECH
Vimu1g02956 1 41940139 41941687 Vimu3g03432 3 47387701 47389574 ECH
Vimu1g02956 1 41940139 41941687 Vimu1g02956 1 41940139 41941687 ECH
Vimu1g02956 1 41940139 41941687 Vimu10g03272 10 42975476 42976967 PCT