Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g02950 ATGGCAACAGCCTCAGAGAACAACACCAGCACCACGCGCCCTCAGCGCGAGGCCAAGAAGAGAGCCGCAGCTGCTATATGCCAAATGCAGAGAAACGCCAAGAAGAAGCGCGTCGTTTTGGGAGACCTGACTAATGTCTCAGACGCCGCCGTCGCAGTTGCTGTTTCAGATACTCAACAACGGAAAAAAATCAAACTCCAGAAACCGGTGCCGACGGTTGCCACGCCGGAGAAAGTCGACGAGAGGAGTGACCCGCAACTGTGTGGGTCGTATGTTTCGGATATATACGAGTACCTTTGTGGAATGGAGGTTCTTCCTAGTAAGAGACCATTGCCGGATTATATTCAGAAAGTTCAGAAGGATGTGAATGCTAACATGCGTGGGGTTTTGGTGGATTGGTTGGTTGAGGTTGCCGAAGAGTATAAACTGGTTTCAGACACTTTATATTTTTGTGTGGCTTATATAGATAGGTTTTTATCCTTGAATGTATTGTCCAGACAGAGATTGCAGTTGCTTGGGGTTGCTGCAATGCTTATTGCTTCGAAATATGAAGAGATTAAACCACCTGAGGTGGAGGACTTTTGTTACATTACGGATAATACATACTCCAAGGAAGAGGTGGTTATTGTGTTTCGTTTGTTGCTGGTATTACTGCATGCTTTGTCTTTGGATTGCACTGATTTTTGCAATTGTTTGGTGAAGGTTGTGAATATGGAAGCCGATATATTGAAAGCTTTGAGGTTTGAATTGGGTGGTCCAACGGTGAAGACATTCTTGAGGAGGTTCTGTAGAGTTGGTCAAGAGGGCATTGATACATCTGATCTCCAGTTTGATTTCCTTAGCTGCTACCTTGCTGAGCTCAGTTTATTGGATTATAATTGTGTAAAGTTTGTGCCGTCTTTGGTGGCAGCATCTGTTGTATTCTTAGCAAGATTTATGTTAAGATCAAAGACACATCCTTGGAATTCGGCACTCCATCAGCTCACTAGATATAAACCCGCTGACTTCAAGGAATGTGTTCTAAACATACACGATTTATACCTCAGTAGGAGGGGGCCTTCTTTGCAAGCTGTGAGAGAGAAATACAAGCAGCATAAGTTCAAATGTGTGGCAACAACACCATCTCCTCCCGAGATACCCCTTTCTTTTTTTGAATTTTCAGGATCAGATTCTTAG 1176 0.4396 MATASENNTSTTRPQREAKKRAAAAICQMQRNAKKKRVVLGDLTNVSDAAVAVAVSDTQQRKKIKLQKPVPTVATPEKVDERSDPQLCGSYVSDIYEYLCGMEVLPSKRPLPDYIQKVQKDVNANMRGVLVDWLVEVAEEYKLVSDTLYFCVAYIDRFLSLNVLSRQRLQLLGVAAMLIASKYEEIKPPEVEDFCYITDNTYSKEEVVIVFRLLLVLLHALSLDCTDFCNCLVKVVNMEADILKALRFELGGPTVKTFLRRFCRVGQEGIDTSDLQFDFLSCYLAELSLLDYNCVKFVPSLVAASVVFLARFMLRSKTHPWNSALHQLTRYKPADFKECVLNIHDLYLSRRGPSLQAVREKYKQHKFKCVATTPSPPEIPLSFFEFSGSDS 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g02950 391 SMART Cyclin_C_2 253 376 IPR004367 -
Vimu1g02950 391 SUPERFAMILY Cyclin-like 253 378 IPR036915 -
Vimu1g02950 391 SUPERFAMILY Cyclin-like 83 210 IPR036915 -
Vimu1g02950 391 ProSitePatterns Cyclins signature. 127 158 IPR006671 -
Vimu1g02950 391 CDD CYCLIN_AtCycA-like_rpt2 253 367 - -
Vimu1g02950 391 Gene3D - 94 109 - -
Vimu1g02950 391 FunFam Cyclin A1 240 372 - -
Vimu1g02950 391 MobiDBLite consensus disorder prediction 1 21 - -
Vimu1g02950 391 PIRSF Cyclin_A_B_D_E 226 381 IPR046965 GO:0016538|GO:0044772
Vimu1g02950 391 PIRSF Cyclin_A_B_D_E 1 219 IPR046965 GO:0016538|GO:0044772
Vimu1g02950 391 PANTHER CYCLINS 51 370 IPR039361 -
Vimu1g02950 391 FunFam Mitotic cyclin 6 110 210 - -
Vimu1g02950 391 Pfam Cyclin, C-terminal domain 253 375 IPR004367 -
Vimu1g02950 391 Gene3D - 241 380 - -
Vimu1g02950 391 SMART cyclin_7 132 216 IPR013763 -
Vimu1g02950 391 SMART cyclin_7 257 345 IPR013763 -
Vimu1g02950 391 Pfam Cyclin, N-terminal domain 94 218 IPR006671 -
Vimu1g02950 391 Gene3D - 110 215 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g02950 Vimu-Chr1 41840844 41843914 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g02950 1 385 Core Cell Cycle Gene Families AT5G43080 56.072 2.32e-144 412
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu1g02950 1 41840844 41843914 Vimu1g02950 1 41840844 41843914 ECH
Vimu1g02950 1 41840844 41843914 Vimu10g03257 10 42863777 42865523 PCT