Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g02949 ATGGCATCGCCCACAGAGAAGAACACCAACACCAACACCACGCGTCCCCAGAGCAAGGCGAAGAAGAGAGCCGCAGCTGCCATATGCCAGCTGCTCGGTAATGCCAAGAAGAAGCGCGTCGTTTTGGGAGACCTCACGAATGTCTCACGCGCCGTTGCCGTTTCGGAATCTCCGAAACGGAAAAAGGTTAAACTCAAGAATGTCGATGAAAGAAGCTACCCTCAACTCTGTGACCCATACAGATCTGACATATACCAGTACCTTTGCGGATTGGAGGTTGCTCCTCGTTTGAGACCAATCCCGGATTATGTTCAAAAGGTTCAGAACGACGTGGATGGTAACATGCGCGGTGTTCTGGTGGATTGGTTGATTGAGGTTGCAGAAGAGTATGGACTGGTTTCGGATACGTTATATTTTTGTGTGGCTTATATAGATAGGTTTTTATCGTTGAAGGTACTGTCCAGACAGAGATTGCAGTTGCTTGGGGTTGCTGCAATGCTCGTTGCTTCGAAATATGAAGAGGTTAAGCCACCCGAGGTGGAGGACTTATGTTACATTACGGATAATACATACTCTAAGGAAGAGGTTTTGAATATGGAAGCCGATATATTGACGGCGTTGAAATTTGAATTGGGTGCTCCTACCGTGGGGACATTCTTGAGGAGATTCTGTGGAGTTGGTCAAGAGGGTGTTGATACTTCTGCTCTCCAGTTTGAGTTCCTTAGCTGCTACCTTGCAGAACTCAGTTTGTTGGATTATTACTGTGTAAAGTTTTTACCATCTTTGGTGGCAGCATCTGTTGTATTCTTAGCAAGATTTATGCTAAGCACAAAGACACATCCCTGGAATTCGGCCCTCCACCAACTCACTACATATAAACCCACTGACTTGAAGGAATGTATTCTAAAGATACATGACTTGTACCTCAGAAGGAGGGGGCCTTCTTTGCAAGGTGTGAGAGAGAAATACAAACAGCATAAGTTCAAATGTGTGGCAACAACACCATCTCCTCCCGATATACCCCTTTCTTTTTTTGAGTTTTCAAGGGTAGATTCGTAG 1059 0.4542 MASPTEKNTNTNTTRPQSKAKKRAAAAICQLLGNAKKKRVVLGDLTNVSRAVAVSESPKRKKVKLKNVDERSYPQLCDPYRSDIYQYLCGLEVAPRLRPIPDYVQKVQNDVDGNMRGVLVDWLIEVAEEYGLVSDTLYFCVAYIDRFLSLKVLSRQRLQLLGVAAMLVASKYEEVKPPEVEDLCYITDNTYSKEEVLNMEADILTALKFELGAPTVGTFLRRFCGVGQEGVDTSALQFEFLSCYLAELSLLDYYCVKFLPSLVAASVVFLARFMLSTKTHPWNSALHQLTTYKPTDLKECILKIHDLYLRRRGPSLQGVREKYKQHKFKCVATTPSPPDIPLSFFEFSRVDS 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g02949 352 PIRSF Cyclin_A_B_D_E 1 342 IPR046965 GO:0016538|GO:0044772
Vimu1g02949 352 SUPERFAMILY Cyclin-like 214 338 IPR036915 -
Vimu1g02949 352 PANTHER CYCLINS 39 330 IPR039361 -
Vimu1g02949 352 ProSitePatterns Cyclins signature. 116 147 IPR006671 -
Vimu1g02949 352 Gene3D - 83 333 - -
Vimu1g02949 352 Pfam Cyclin, N-terminal domain 83 211 IPR006671 -
Vimu1g02949 352 MobiDBLite consensus disorder prediction 1 19 - -
Vimu1g02949 352 MobiDBLite consensus disorder prediction 1 21 - -
Vimu1g02949 352 SMART cyclin_7 121 205 IPR013763 -
Vimu1g02949 352 SMART cyclin_7 218 306 IPR013763 -
Vimu1g02949 352 CDD CYCLIN_AtCycA-like_rpt2 214 328 - -
Vimu1g02949 352 FunFam Cyclin A1 201 333 - -
Vimu1g02949 352 SMART Cyclin_C_2 214 337 IPR004367 -
Vimu1g02949 352 Gene3D - 97 212 - -
Vimu1g02949 352 SUPERFAMILY Cyclin-like 74 211 IPR036915 -
Vimu1g02949 352 Pfam Cyclin, C-terminal domain 214 336 IPR004367 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g02949 Vimu-Chr1 41832596 41835755 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g02949 10 346 Core Cell Cycle Gene Families AT1G47230 55.278 1.70e-140 401
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu1g02949 1 41832596 41835755 Vimu10g03255 10 42852788 42855432 PCT