Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g02946 ATGGCGTCGAGTTTTGACCGGTGGGAGAAGGATCCTTTCTTTAACGCCGCCGAAGAAGTTCAAGAGTCTGCAGACAGGATGGAATCTACGTATAGGATATGGTTACACGCAACAAAAGATGCGTCCAGCATGTGGAACTCTGATGAAGTGTGTAGAGATCTACATATTGCACTTGGCACTGCCAAATGGCAGTTAGAGGAATTTGAGCGGGCAGCGATGTCAAGTTATGGCAAAATTTCAAGTGATGAAGCGAGAAGTAGGCACCAACAATTTATCACTGCCATTGAGGATAAGATAATGAAAGTTGAGCATTCGATAAGTGAATCGGTTGGCAAGGCATCTCTGCCTTGGTTGCGTTTAGACGAAGGAGAACAGGATGAGCTTGCTTTGTTTCTTTCGGGAAAACCAGAAATTAACAGCAGGGACATTGAAGATCCACCAGTGACTAATTGTTCGAAGGATTTTCATGTTTCATATGGATGGGGTGAACCAAAGGGGGAGATATCACGTGGGCATCGCAGGGTAGCTAGTGCTAGTGCTGATATTGGATTTTGGAAAGTTTCAGTTCATGATGATGCACAGCAGTGGAGTTCATCAAGTGGTTCTTCTGGTCCAATGCATAATAAGGCACCCAGTTTATCAGGATTTCTTAGTTCAATGGAATCAGTCTCTAAGTTGAAGTGGTCTAGGAATGCTTATAAAAAGCTGAAAGCAGTGAATCCTCATACAGAAACTGATAGCACACTACTTCCAACTGCTGAATTCAATAGGGGCAACAGTGCAAGCTGTGAAAGTAAGAGTGGCCTTGATAGTTGTGACGAATGCTATGACAAACAACTCTATGGATGGTATGGTGCTATTCGAAGAAAGCTTCAAAGATCTCAATACCAAATTCAACACAGGCAGCCTGTTCGAATTGCTGTTTGGATTTTTTTTCTCCTTTGTTTTATAGAGTCTAGCATAGTTCATGGCAACTCCACAATTCTGCTATTCAATCTGTTCTTCCCTTCTCTTTTCTTAATAGTCCATGAAGAGCTCTCTGATAAAGGGAATTAG 1056 0.4233 MASSFDRWEKDPFFNAAEEVQESADRMESTYRIWLHATKDASSMWNSDEVCRDLHIALGTAKWQLEEFERAAMSSYGKISSDEARSRHQQFITAIEDKIMKVEHSISESVGKASLPWLRLDEGEQDELALFLSGKPEINSRDIEDPPVTNCSKDFHVSYGWGEPKGEISRGHRRVASASADIGFWKVSVHDDAQQWSSSSGSSGPMHNKAPSLSGFLSSMESVSKLKWSRNAYKKLKAVNPHTETDSTLLPTAEFNRGNSASCESKSGLDSCDECYDKQLYGWYGAIRRKLQRSQYQIQHRQPVRIAVWIFFLLCFIESSIVHGNSTILLFNLFFPSLFLIVHEELSDKGN 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g02946 351 Pfam Syntaxin 6, N-terminal 11 102 IPR015260 GO:0016020|GO:0048193
Vimu1g02946 351 SUPERFAMILY t-snare proteins 10 108 IPR010989 GO:0016020|GO:0016192
Vimu1g02946 351 CDD SNARE_NTD_STX6-like 11 106 - -
Vimu1g02946 351 Gene3D - 9 110 - -
Vimu1g02946 351 PANTHER OS05G0443700 PROTEIN 1 316 - -
Vimu1g02946 351 FunFam Syntaxin 10 8 109 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g02946 Vimu-Chr1 41792136 41794401 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu1g02946 1 41792136 41794401 Vimu1g02946 1 41792136 41794401 ECH
Vimu1g02946 1 41792136 41794401 Vimu10g03239 10 42778266 42781280 PCT