Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g02935 ATGGCTCTCCAAGCTCTCAACTCACCCACAGCAACAACTCCATCTTTCCCTTTTCACGACCCAACCATTCCATGGGCAAAACGTAAGCGCTCCAAGCGTTCCCGCGACCAACCTTCCGAAGAAGAGTACCTCGCTCTCTGCCTCATCATGCTCGCTCGCGGCGGCACCGCCACCACCACCACACCCGCACCAACCCACCGCCACATCACCGCTTCACAACCCACCCCAGATCCTTCCTCCAAGCTCACCTACAAATGCTCTGTCTGTCACAAAACCTTTCCCTCTTACCAAGCTCTCGGGGGACACAAGGCCAGCCACCGGAAACTCGCCCTGCCCGACGACCACCCCACCTCCTCTGCCATCACCGCCACCAGCACCGTCAGTACCGCCGGAGGCGGTCGTGCCCATGAGTGCTCCATCTGCCACAAGTCCTTCCCCACCGGACAGGCTCTCGGTGGACACAAACGTTGTCACTACGAAGGTAATAACGGTAACGGAAACAGTGTGGTAACCGCCTCCGAAGGTGTGGGGTCTACTCACACCGTGAGTCACGGCCACCACCACCCCCACCACCGTGATTTTGATCTCAATATCCCGGCTTTTCCCGAATTTTCAACCAAGGTCGGAGAAGACGAGGTTGAGAGCCCTCACCCTGTGATGAAGAAGCAGCGTCTCTTTGTGATTCCCAAAATTGAAATTCCTCAATTTCAGTAA 714 0.5658 MALQALNSPTATTPSFPFHDPTIPWAKRKRSKRSRDQPSEEEYLALCLIMLARGGTATTTTPAPTHRHITASQPTPDPSSKLTYKCSVCHKTFPSYQALGGHKASHRKLALPDDHPTSSAITATSTVSTAGGGRAHECSICHKSFPTGQALGGHKRCHYEGNNGNGNSVVTASEGVGSTHTVSHGHHHPHHRDFDLNIPAFPEFSTKVGEDEVESPHPVMKKQRLFVIPKIEIPQFQ 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g02935 237 MobiDBLite consensus disorder prediction 23 38 - -
Vimu1g02935 237 Gene3D Classic Zinc Finger 81 158 - -
Vimu1g02935 237 MobiDBLite consensus disorder prediction 1 17 - -
Vimu1g02935 237 MobiDBLite consensus disorder prediction 57 80 - -
Vimu1g02935 237 ProSitePatterns Zinc finger C2H2 type domain signature. 86 106 IPR013087 -
Vimu1g02935 237 Pfam C2H2-type zinc finger 135 159 - -
Vimu1g02935 237 Pfam C2H2-type zinc finger 84 108 - -
Vimu1g02935 237 ProSiteProfiles Zinc finger C2H2 type domain profile. 84 106 IPR013087 -
Vimu1g02935 237 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY-RELATED 29 202 IPR044653 GO:0003700
Vimu1g02935 237 SMART c2h2final6 84 106 IPR013087 -
Vimu1g02935 237 SMART c2h2final6 136 158 IPR013087 -
Vimu1g02935 237 ProSiteProfiles Zinc finger C2H2 type domain profile. 136 163 IPR013087 -
Vimu1g02935 237 MobiDBLite consensus disorder prediction 1 38 - -
Vimu1g02935 237 ProSitePatterns Zinc finger C2H2 type domain signature. 138 158 IPR013087 -
Vimu1g02935 237 SUPERFAMILY beta-beta-alpha zinc fingers 83 158 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g02935 Vimu-Chr1 41689041 41691483 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g02935 1 233 C2H2 Transcription Factor Family AT1G27730 50.199 1.05e-60 189
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vimu1g02935 zf-C2H2_6 9.2e-13 CL0361
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu1g02935 1 41689041 41691483 Vimu10g03234 10 42753924 42755561 PCT