Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g02934 ATGGAACCTGTTGGAGCCTTCCCTGATGGAGAATGGGATTGCTTTCGCAGAATCTTTGCCATTGAGGATCATGAGCATGATTTCACCCAGGAATTTCCTCTTCTGCTTGCTGGGGGCGATGAACTGAACATTCTGACACAGCAAGCCAATTTTTGTGCTGCTCCTGAAGCTGTTGAAAACGAGCTGATGTTTTATTCTTTAGATGCTCACAACAACTCAAATACTTCACAGTATATTTCTCAGGAAAGTAGCTATAGTAATAGTAGCAATTGTAGTGGTGATGACACTGTCTTCATTGCCAATCCGGGTAGCTCAAACTATTATTTTAGTTACCCTGATCATATGTTAGCAGATAATGCATGTGTATATTCCTTGGATGAGAAACATTTTGCCCCTTTTGCTCCATCGCTTGCTAACATAGCAACCGAGGAGAGTGTGAAGCTGTATGAAGATTTGGCAAGTGACAGATTGGAGAATTTCGAATGCAATCAAATGGAACCTGTTGTTTTTCCCTCCAAGAGGAGGCTTGATGTTCCTGCTGAAGGTAAAATCAACAACAGATCAGAGAATCACAAGAAAAAAGCTCGTGTTTTAAAAGATGTGCAAGGATGTATGAAGAACAGCACATGGTCCAAGAAGAATCAGAAACATGACAGCAATAGGGAAGATGCAGAAGAGACTAATGCAGGATCAGATGGACAAAGCTCTAGTAGTAACATATCAGAGGAAGATAACAAGGAAAATATTGGAGTTGCTACTTCAGAATCTAAATCTGTTCTCAACTCAAATGGAAAAACAAGAGCAAGTAGGGGATCAGCAACAGATCCCCAGAGCCTGTATGCAAGGAAAAGAAGAGAGAGAATAAACGAACGATTAAGAATCCTACAGAATCTTGTCCCTAATGGAACCAAGGTTGATATAAGTACAATGCTTGAAGAGGCAGTGAATTATGTGAAATTTTTGCAGATCCAGATCAAGCTTTTAAGCTCTGATGATCTATGGATGTATGCTCCACTTGCTTATAATGGGCTTGACATTGGAATCAATTTGAACATGAAGAACTCCCTACCACTCTGA 1077 0.403 MEPVGAFPDGEWDCFRRIFAIEDHEHDFTQEFPLLLAGGDELNILTQQANFCAAPEAVENELMFYSLDAHNNSNTSQYISQESSYSNSSNCSGDDTVFIANPGSSNYYFSYPDHMLADNACVYSLDEKHFAPFAPSLANIATEESVKLYEDLASDRLENFECNQMEPVVFPSKRRLDVPAEGKINNRSENHKKKARVLKDVQGCMKNSTWSKKNQKHDSNREDAEETNAGSDGQSSSSNISEEDNKENIGVATSESKSVLNSNGKTRASRGSATDPQSLYARKRRERINERLRILQNLVPNGTKVDISTMLEEAVNYVKFLQIQIKLLSSDDLWMYAPLAYNGLDIGINLNMKNSLPL 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g02934 358 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 272 321 IPR011598 GO:0046983
Vimu1g02934 358 Pfam Helix-loop-helix DNA-binding domain 282 322 IPR011598 GO:0046983
Vimu1g02934 358 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 272 336 IPR036638 GO:0046983
Vimu1g02934 358 CDD bHLH_AtIND_like 273 335 - -
Vimu1g02934 358 MobiDBLite consensus disorder prediction 211 228 - -
Vimu1g02934 358 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 89 344 - -
Vimu1g02934 358 MobiDBLite consensus disorder prediction 229 276 - -
Vimu1g02934 358 FunFam Basic helix-loop-helix transcription factor 273 330 - -
Vimu1g02934 358 MobiDBLite consensus disorder prediction 206 278 - -
Vimu1g02934 358 Gene3D - 274 330 IPR036638 GO:0046983
Vimu1g02934 358 SMART finulus 278 327 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g02934 Vimu-Chr1 41675229 41676862 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g02934 259 348 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G33880 90.000 2.38e-53 178
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vimu1g02934 HLH 1.2e-08 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu1g02934 1 41675229 41676862 Vimu1g02934 1 41675229 41676862 ECH