Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g02914 ATGTTGTGTGCTTGTTCGGGGGAGCAATTCAAGTTTGAAGAGGCACCACAGTCACCTGAGTCCTTGGCAACAAGGGATTTCTCTGCAAGTGGTCTTTCTTCAAGGACTGGGGATTGGGAATCCAAATTTGATGAGACGCAAGTTGAAGAAGCTGAATCTACTCTAAAAGAAACACTCTCATTAAACTATGAGGAAGCTCGGGCTTTGCTGGGGAGGCTTGAATACCAAAGAGGGAACTTTGATGCTGCCCTTCAAGTTTTTGAAGGGATAGACATAAGGGTTTTGGCCCCAAGGATGATCAGGGCAATAGCTGAAAGAACCAAGCAAAGAAAACCACGGTCAAAGGTGGATAATGTGCTTCCTAATGTAATGTCAATGCATTCAGTAAGCCTGCTTCTAGAGGCAATTTTGCTTAAATCCAAATCCTTAGAAGAACTTGGAAGATACACCGGTATCACCACCTTCATATCTCTTTCAGATGTCTTGCAGATTCTTTTCTTTTGTTTGATTCAAAGTTTGGCTCTTATATGTCATAGAATCGCTGCGAAAGAGTGCAGAATTATTGTGGATACAGTAGAATCTGCTCTTCCAAAAGGAATGCCTGAAGGTATTGGTGAAGATTGTAAGTTGCAAGAAATGTTCCACAAAGCATTGGAGTTGCTTCCAAATCTATGGATCAAATCTGGTTTTCTAGAAGAAGCTGTCACTGCTTATCGGAGGGCTCTAATCAAGCCATGGAATTTGGAGCCGTGGAGATTGGCCAGGGTACAAAAAGATTTGGTTACCACACTACTCTATGGTGGTACTGAAGTAAACATACCCTCTCAGCTGCAAGTGAATGGTTTAACAACACCTATGAATGGTACTGAAGAAGCCATACTTTTGCTGTTAATACTCTCGGGAAAGATGGCACTTCAGGAAATAGACTGGGACCCTGAAATAATTGATCATCTTACATTTTCTCTTTCAGTTACTGGAATGTTTGAATCATTGGCAGATAACGTAGAGAAGATCCTTCCGGGGGTTTATGATCGGGCAGAGAGGTGGCACTTTCTTGCTCTTTGTTACAGTGCAGCAGGAGAGAATGAAGTGGCCTTGAACCTTTTGAGGAAAGCTTGTGGTAGTTCTGAAGCCAAGCATAGACCCTATTTTCCTTCATTTTTGTTTGCTGCAAAGCTGTGTTCTTTATGTCCAAACCATGCTCATGAAGGCATCAAGTTTTCACAAGAAGTTATTGATCTAGCCAAGTATCAAAATGAGCATTTTCTGGGTGAGGGCCTAAAATTTATGGGCACTTGCCAAGGGGCTGCTGCTAGAGTATCTGTACTAGATTCTGAAAGAATTATATTCCAAAGAGAGTCTTTGTACTTTCTAAATGATGCTGTCTCTCTAAATGGAAACAATGATCCAGAAGTGATACTCAGCCTTGGATTGGAAAATGCAATCCAAAGAAATTTAAATACAGCATATGACAATTTAATGATATACTCTGACATGATGGCTGGCAGCTCAAAAAGAGGTTGGCAGTTGTTAGCACTCATAGTATCAGCGGAACAGAGGTTTAAGGATGCAGAAACTATAGTTGATTTTGCGTTAGATGAGGCTGGTAGTATAGACCAGTTAGAACTATTGAGACTGAAAGCTATTCTTCAAATTACACAGCAGCAACCCAAGAAAGCAGTAGAGACCTACAGAATCTTGCTAGCAGTAATTGAATCACAAAAGGAGCATTGGCTTCAGGCCAAGGCATTCAGGCATGAGGCATTAAAACAACAGAAGTTGGAAATGGAAGTCTGGCAAGATTTGGCCACCATTTATGTAGATCTTTGCTCCTTTCTAGATGCAAAAGCTTGTGTTGACAAGGCTCAGTTGATAGAATTTTTTTCTCCAAGAAGTTGGCATATTACTGGGTTGTTGTTTGAATCTCGGACATTGCATAAGGAGGCCTTAGCTTCCTTCTCAGTCTCATTGTCAACAGAACCGGATTACATTCCCAGTATCATTTCAGCTGCAAAATTAATGCTTAAACTTGGCATGCAATCACTCCCAATCGCAAGAAGCTTTTTAATGAATGCTTTGAGATTAGATCCTACAAACCATGAGGCATGGTTTAACCTTGGACTAGTTTCAAAAATGGAAGGTTCATTACAACAAGCAGCAGATTGCTTTCAAGCCGCATATGAGCTGAAGCTTTCAGCTCCAGTGCAAGAATTTGAGTGA 2220 0.4104 MLCACSGEQFKFEEAPQSPESLATRDFSASGLSSRTGDWESKFDETQVEEAESTLKETLSLNYEEARALLGRLEYQRGNFDAALQVFEGIDIRVLAPRMIRAIAERTKQRKPRSKVDNVLPNVMSMHSVSLLLEAILLKSKSLEELGRYTGITTFISLSDVLQILFFCLIQSLALICHRIAAKECRIIVDTVESALPKGMPEGIGEDCKLQEMFHKALELLPNLWIKSGFLEEAVTAYRRALIKPWNLEPWRLARVQKDLVTTLLYGGTEVNIPSQLQVNGLTTPMNGTEEAILLLLILSGKMALQEIDWDPEIIDHLTFSLSVTGMFESLADNVEKILPGVYDRAERWHFLALCYSAAGENEVALNLLRKACGSSEAKHRPYFPSFLFAAKLCSLCPNHAHEGIKFSQEVIDLAKYQNEHFLGEGLKFMGTCQGAAARVSVLDSERIIFQRESLYFLNDAVSLNGNNDPEVILSLGLENAIQRNLNTAYDNLMIYSDMMAGSSKRGWQLLALIVSAEQRFKDAETIVDFALDEAGSIDQLELLRLKAILQITQQQPKKAVETYRILLAVIESQKEHWLQAKAFRHEALKQQKLEMEVWQDLATIYVDLCSFLDAKACVDKAQLIEFFSPRSWHITGLLFESRTLHKEALASFSVSLSTEPDYIPSIISAAKLMLKLGMQSLPIARSFLMNALRLDPTNHEAWFNLGLVSKMEGSLQQAADCFQAAYELKLSAPVQEFE 739
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g02914 739 MobiDBLite consensus disorder prediction 14 42 - -
Vimu1g02914 739 ProSiteProfiles TPR repeat profile. 700 733 IPR019734 GO:0005515
Vimu1g02914 739 MobiDBLite consensus disorder prediction 21 37 - -
Vimu1g02914 739 PANTHER PROTEIN NPG1 180 739 IPR043376 -
Vimu1g02914 739 Gene3D Tetratricopeptide repeat domain 568 734 IPR011990 GO:0005515
Vimu1g02914 739 SUPERFAMILY TPR-like 47 373 IPR011990 GO:0005515
Vimu1g02914 739 SUPERFAMILY TPR-like 546 729 IPR011990 GO:0005515
Vimu1g02914 739 SMART tpr_5 630 663 IPR019734 GO:0005515
Vimu1g02914 739 SMART tpr_5 700 733 IPR019734 GO:0005515
Vimu1g02914 739 SMART tpr_5 346 379 IPR019734 GO:0005515
Vimu1g02914 739 SMART tpr_5 541 574 IPR019734 GO:0005515
Vimu1g02914 739 Gene3D Tetratricopeptide repeat domain 290 567 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g02914 Vimu-Chr1 41498360 41504362 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g02914 1 738 Calmodulin-binding Proteins AT1G27460 55.256 0.0 813
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu1g02914 1 41498360 41504362 Vimu1g02914 1 41498360 41504362 ECH
Vimu1g02914 1 41498360 41504362 Vimu10g03221 10 42644290 42648074 PCT