Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g02214 ATGCCAAATCAACACCCCATTTTGCATCGTACTTTCCTCATGTTTCTCTTGTACTTTCTACTCAATGCAGCTCCTGTGAGTTGCAAATCCACCATTGAGCCATGCTCTGATAGTAACTCGTGCAATGCTCTTCTTGGTTACACCCTTTACACTGAGCTCAAGGTCTCTGAGGTTGCTTCTCTCTTCCAAATAGACCCTATTGCTCTTCTCACTGCCAATGCCTTTGACATATCCTTCTCTGATGTAGAGCATCACATTCTCCCTTGCAAACTCTTCCTCAAGGTCCCTATCACATGTTCCTGTGCTGATGGGATTAGAAAATCAGTGTCTGCCCATTACAGGACTCGTCCTTCTGATACTCTCTCTTCCATTGCAGATTCAGTGTATGGAGGTCTGGTGTCTCCTGATCAGCTTAGGGAGGCTAATTCCATAGCTGACCCTTCGATGCTTGATGTGGGTCACAACCTTGTGGTGCCACTTCCATGCACATGCTTCAATGGCAGTGATAATTCTTTGCCTTCAATTTACCTCTCTTATGTGGTAAAGCCAATGGATACTTTGGCTGCCATTGCAGCTAGGTATTTCACCACACTTACTGATTTGATGAATGTCAATGACATGGGGAGTGCTGCTATCTCTGATGGAGATATTCTTGCTGTTCCAATTCCTGGTAACTCTTATTGTCTTTCTACTTAA 696 0.4425 MPNQHPILHRTFLMFLLYFLLNAAPVSCKSTIEPCSDSNSCNALLGYTLYTELKVSEVASLFQIDPIALLTANAFDISFSDVEHHILPCKLFLKVPITCSCADGIRKSVSAHYRTRPSDTLSSIADSVYGGLVSPDQLREANSIADPSMLDVGHNLVVPLPCTCFNGSDNSLPSIYLSYVVKPMDTLAAIAARYFTTLTDLMNVNDMGSAAISDGDILAVPIPGNSYCLST 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g02214 231 CDD LysM 178 220 IPR018392 -
Vimu1g02214 231 Gene3D LysM domain 168 227 IPR036779 -
Vimu1g02214 231 ProSiteProfiles LysM domain profile. 111 158 IPR018392 -
Vimu1g02214 231 Gene3D LysM domain 109 167 IPR036779 -
Vimu1g02214 231 PANTHER LYSM DOMAIN-CONTAINING GPI-ANCHORED PROTEIN 2 12 223 - -
Vimu1g02214 231 Pfam LysM domain 113 159 IPR018392 -
Vimu1g02214 231 Pfam LysM domain 179 221 IPR018392 -
Vimu1g02214 231 CDD LysM 112 158 IPR018392 -
Vimu1g02214 231 ProSiteProfiles LysM domain profile. 177 229 IPR018392 -
Vimu1g02214 231 SMART LysM_2 112 159 IPR018392 -
Vimu1g02214 231 SMART LysM_2 178 221 IPR018392 -
Vimu1g02214 231 SUPERFAMILY LysM domain 177 222 IPR036779 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g02214 Vimu-Chr1 31810304 31810999 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g02214 12 222 LysM Receptor-like Protein (LYPs) Gene Family AT1G21880 70.423 1.98e-105 309
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g02214 - - pvu:PHAVU_008G163700g 412.149
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu1g02214 1 31810304 31810999 Vimu1g02214 1 31810304 31810999 ECH